Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K04
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    29   0.66 
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    27   4.6  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   6.1  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    26   8.1  

>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 513 GALDNSYVVGV*EHSLVHVDSGVACCFV-ETFRIFGIIEQLEQ-RDGFFPHFFVKD 352
           G + N Y+  +  HS       +AC  V ET R FGI   +EQ R    P  F  D
Sbjct: 612 GVISNKYLSMLSAHSSYWSSEDLACFLVVETGRNFGIANSIEQFRGKHMPRIFKGD 667


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/58 (27%), Positives = 32/58 (55%)
 Frame = -1

Query: 477 EHSLVHVDSGVACCFVETFRIFGIIEQLEQRDGFFPHFFVKDREFQILGKESDLVHHH 304
           ++ +++VD  +A CFV+  R  G    LE+ + +  +  + +  F +LG+   L+ HH
Sbjct: 539 DNLILNVDGCIAVCFVDLLRNCGAF-TLEEANEYI-NLGILNGMF-VLGRSIGLIGHH 593


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +1

Query: 553 YPQYFVXMEVTNTMDYVXMMDGCLDEKICYNYGIIKXNEQFVMYANYSNSLDLPQ 717
           +P  F+    T T+DY   M   + + I  ++GI   NE  + + N +   D  Q
Sbjct: 255 FPILFLSPTSTKTIDYAKSMIEWMGDNIVRDFGI---NENLLEFRNINTITDFSQ 306


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -1

Query: 321 DLVHH-HEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIVDLVNVVEKRQNLLLLF 163
           DL HH +  F GF VC+  ++  + + + D + L   ++ +NVV    N++ +F
Sbjct: 243 DLEHHDYRSFRGF-VCLMQISNREKDWIVDTLELREELEALNVVFTNPNIIKVF 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,015,799
Number of Sequences: 5004
Number of extensions: 58114
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)