Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K03
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...   123   3e-29
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...   123   3e-29

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score =  123 bits (297), Expect = 3e-29
 Identities = 53/79 (67%), Positives = 65/79 (82%)
 Frame = +2

Query: 173 RREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHE 352
           RREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S E
Sbjct: 23  RREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSE 82

Query: 353 LPRYGVKVGLTNYAAAYST 409
           LPRYG+K GL N+ AAY+T
Sbjct: 83  LPRYGIKWGLANWTAAYAT 101



 Score =  114 bits (274), Expect = 2e-26
 Identities = 53/115 (46%), Positives = 75/115 (65%)
 Frame = +1

Query: 502 EPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAXSXKFNA 681
           E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG+D  + + + 
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDD 192

Query: 682 EVHRAHIFGLHVAEYMXSLEQDDXDSFXRXFXXYIKLXVXAXAIEXIYXKXHEXI 846
           E  R +I+G HVAEYM  L  DD + + + F   I   + +  +E IY + +  I
Sbjct: 193 ETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKI 247


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score =  123 bits (297), Expect = 3e-29
 Identities = 53/79 (67%), Positives = 65/79 (82%)
 Frame = +2

Query: 173 RREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHE 352
           RREGKTDYYARKRL+ Q KNKYN PKYRL+VR SN+ VTCQ+  SR+ GD+++  A+S E
Sbjct: 23  RREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSE 82

Query: 353 LPRYGVKVGLTNYAAAYST 409
           LPRYG+K GL N+ AAY+T
Sbjct: 83  LPRYGIKWGLANWTAAYAT 101



 Score =  114 bits (274), Expect = 2e-26
 Identities = 53/115 (46%), Positives = 75/115 (65%)
 Frame = +1

Query: 502 EPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAXSXKFNA 681
           E +++GP  F+ +LDVGL RT+TG+RVFGAMKGA DGGL +PHS  RFPG+D  + + + 
Sbjct: 133 EAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDD 192

Query: 682 EVHRAHIFGLHVAEYMXSLEQDDXDSFXRXFXXYIKLXVXAXAIEXIYXKXHEXI 846
           E  R +I+G HVAEYM  L  DD + + + F   I   + +  +E IY + +  I
Sbjct: 193 ETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKI 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,763
Number of Sequences: 5004
Number of extensions: 54817
Number of successful extensions: 144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)