Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K03
         (846 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             177   1e-44
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)          91   1e-18
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)                   29   3.6  
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)                    29   3.6  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  177 bits (430), Expect = 1e-44
 Identities = 81/119 (68%), Positives = 94/119 (78%)
 Frame = +1

Query: 490 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAXSX 669
           EYNVE VD  PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PHS+KRFPGYD+ S 
Sbjct: 161 EYNVESVDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPHSMKRFPGYDSESK 220

Query: 670 KFNAEVHRAHIFGLHVAEYMXSLEQDDXDSFXRXFXXYIKLXVXAXAIEXIYXKXHEXI 846
            F+AEVHR HIFG HVAEYM SL ++D +S+ R F  YIK  V A +IE IY   H+ I
Sbjct: 221 DFSAEVHRNHIFGKHVAEYMRSLAEEDEESYKRQFSAYIKNGVDADSIEGIYKAAHQAI 279



 Score = 78.6 bits (185), Expect(2) = 8e-28
 Identities = 31/41 (75%), Positives = 37/41 (90%)
 Frame = +2

Query: 173 RREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 295
           R +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 18  RSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58



 Score = 63.7 bits (148), Expect(2) = 8e-28
 Identities = 24/39 (61%), Positives = 35/39 (89%)
 Frame = +2

Query: 293 QVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYST 409
           ++AY++++GD ++ +AY+HELP +GVKVGLTNYAAAY T
Sbjct: 95  RIAYAKLDGDRVLASAYAHELPNFGVKVGLTNYAAAYCT 133


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 38/47 (80%), Positives = 43/47 (91%)
 Frame = +1

Query: 490 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPH 630
           EYNVE +D  PGAFRC+LDVGLART+TGARVFGA+KGAVDGGL +PH
Sbjct: 66  EYNVESIDGSPGAFRCFLDVGLARTSTGARVFGALKGAVDGGLEIPH 112



 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 30/38 (78%), Positives = 36/38 (94%)
 Frame = +2

Query: 296 VAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYST 409
           +AY+++EGD I+CAAY+HELPRYGVKVGLTNYAAAY T
Sbjct: 1   IAYAKLEGDVIICAAYAHELPRYGVKVGLTNYAAAYCT 38


>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
          Length = 791

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 620 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 507
           +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 356 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393


>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
          Length = 624

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 620 LRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 507
           +RP    PF+ P +RAP    A PT+      P P S+
Sbjct: 222 MRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 257 LIVRLSNKDVTCQVAYSRIEGD-HIVC 334
           L++ LS +D+TC V YS   G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 305 SRIEGDHIVCAAYSH-ELPRYGVKVGLTNYAAAY 403
           ++  GDH+  A+YSH ++ R+ V + L    AAY
Sbjct: 133 AKYRGDHLDIASYSHQQIDRFAVLLDLWTNEAAY 166


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,200,665
Number of Sequences: 59808
Number of extensions: 443821
Number of successful extensions: 1210
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2395401800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)