Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K03
         (846 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   124   1e-28
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   123   1e-28

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  124 bits (298), Expect = 1e-28
 Identities = 59/119 (49%), Positives = 80/119 (67%)
 Frame = +1

Query: 490 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAXSX 669
           +++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+   + 
Sbjct: 129 DFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENK 187

Query: 670 KFNAEVHRAHIFGLHVAEYMXSLEQDDXDSFXRXFXXYIKLXVXAXAIEXIYXKXHEXI 846
           + +AE+HR +I+G HV+ YM  L +D+ +     F  YIK  V A +IE +Y K H  I
Sbjct: 188 QLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVHAAI 246



 Score =  117 bits (281), Expect = 1e-26
 Identities = 51/79 (64%), Positives = 63/79 (79%)
 Frame = +2

Query: 173 RREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHE 352
           RR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  Q+  + I GD +  +AY+HE
Sbjct: 23  RRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHE 82

Query: 353 LPRYGVKVGLTNYAAAYST 409
           LP+YG+ VGLTNYAAAY T
Sbjct: 83  LPQYGLTVGLTNYAAAYCT 101


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  123 bits (297), Expect = 1e-28
 Identities = 59/119 (49%), Positives = 80/119 (67%)
 Frame = +1

Query: 490 EYNVEPVDNGPGAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNVPHSIKRFPGYDAXSX 669
           +++VEP D+    FR  LDVGL RTTTG RVFGA+KGA+DGGL++PHS KRF G+   + 
Sbjct: 129 DFSVEPTDSRR-PFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENK 187

Query: 670 KFNAEVHRAHIFGLHVAEYMXSLEQDDXDSFXRXFXXYIKLXVXAXAIEXIYXKXHEXI 846
           + +AE+HR +I+G HV+ YM  L +D+ +     F  YIK  V A +IE +Y K H  I
Sbjct: 188 QLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVHAAI 246



 Score =  117 bits (281), Expect = 1e-26
 Identities = 51/79 (64%), Positives = 63/79 (79%)
 Frame = +2

Query: 173 RREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHE 352
           RR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+  Q+  + I GD +  +AY+HE
Sbjct: 23  RRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHE 82

Query: 353 LPRYGVKVGLTNYAAAYST 409
           LP+YG+ VGLTNYAAAY T
Sbjct: 83  LPQYGLTVGLTNYAAAYCT 101


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,217,751
Number of Sequences: 28952
Number of extensions: 287720
Number of successful extensions: 650
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)