Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K02
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    27   4.6  
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy...    26   6.1  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   6.1  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    26   8.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.1  

>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
 Frame = +1

Query: 265 TPRLKVPSRTSTQNTPPSKLRVPTSTLPLXGQPIDL---------AYVADE------NGY 399
           +PR +V S + T N     L  P ST     QP            ++VAD+         
Sbjct: 225 SPRPQVSSSSITTNATYQNLPSPVSTSTTSSQPYGAFHQPATTGSSFVADKWKMPMFTSN 284

Query: 400 QPQGKPSAHPSP-NSRGDRPRSCLXSR 477
               +PSA  SP  S   RPRS L S+
Sbjct: 285 VTSAQPSARASPVQSNSSRPRSSLDSK 311


>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
           N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 543

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 434 PIPEAIARALAYXRGPPPQPLRSWKE 511
           PIPEAI  A  +  GP   P   WK+
Sbjct: 466 PIPEAIDEACGFTTGPQGTPTH-WKQ 490


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 265  TPRLKVPSRTSTQNTPPSKLRVPTST 342
            TP+LK+PS+  T N    ++ V TS+
Sbjct: 1169 TPKLKIPSQQVTVNNTLQQIHVHTSS 1194


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = +1

Query: 388 ENGYQPQGKPSAHPSPNSRGDRPRSCLXSRXXXXXXXXVERKVVANLLG*VKTTTYRHXY 567
           ++G + +G+P  +P PN       S + S+               NL   ++  T R  +
Sbjct: 222 KSGSRGRGRPRKYPLPNVESKESSSKVNSKDENFDLQDDSESSEDNLT--IQPQTPRRRH 279

Query: 568 KRN*HNVXN 594
           KR+ HN  N
Sbjct: 280 KRSRHNSSN 288


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +1

Query: 280  VPSRTSTQNTPPSKLRVPTSTLPLXGQPIDLAYVADENGYQPQGKPSAHPSP 435
            VP  +S   + P  +  P+S +P    P     V   +G  P  KPS    P
Sbjct: 1052 VPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP 1103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,991
Number of Sequences: 5004
Number of extensions: 26422
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)