Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K02
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    33   0.35 
AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical ...    31   1.4  

>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = +1

Query: 268 PRLKVPSRTSTQNTPPSKLRVPTSTLPLXGQPIDLAY-----VADENGYQ-PQGKPSAHP 429
           P    PS++  Q+ PPS+ ++P ++ P        AY         +GYQ P   P A P
Sbjct: 574 PASMEPSQSVDQSAPPSQAQIPATSTPSTSSQQQNAYPEFPDFPSSSGYQEPTVAPEAIP 633

Query: 430 SPN 438
           SP+
Sbjct: 634 SPS 636


>AC006610-7|AAK85451.1|  392|Caenorhabditis elegans Hypothetical
           protein C30F12.5 protein.
          Length = 392

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 395 VTNPRXSHLPTPHPIPEAIARALAYXRGPPPQPLR-SWKEKSSPTC*DKSRQQHTXT 562
           + +P  S LP   P    I RA     G PP PL  S+   + P   D  R+Q T T
Sbjct: 323 IGHPLYSPLPPIDPTYGTIPRARLAPNGAPPPPLSPSYSSGNDPHFLDPRRKQETQT 379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,725,095
Number of Sequences: 27780
Number of extensions: 166658
Number of successful extensions: 614
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)