Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K02
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    36   5e-04
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   8.5  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 35.9 bits (79), Expect = 5e-04
 Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 355 GQPIDLAYVADENGYQPQGK--PSAHPSP 435
           GQ + + YVADENG+Q QG   P+A P P
Sbjct: 82  GQQVSITYVADENGFQVQGSHIPTAPPIP 110



 Score = 29.5 bits (63), Expect = 0.043
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 240 NYETGNGIYAQAEGAVKNVNSEYPAIEVKGAYKY 341
           N+ET NGI  Q  G  K V++E P +  +G+  Y
Sbjct: 45  NFETSNGISHQESGQPKQVDNETPVVS-QGSDSY 77



 Score = 28.3 bits (60), Expect = 0.098
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 413 SHLPTPHPIPEAIARALAYXRGPPPQ 490
           SH+PT  PIP  I RAL +    P +
Sbjct: 101 SHIPTAPPIPPEIQRALEWNAAHPEE 126


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 280 VPSRTSTQNTPPSKLRVPTSTLP 348
           +P   S   TP S +  P  TLP
Sbjct: 654 LPRPISCHTTPDSFIEAPNKTLP 676


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,516
Number of Sequences: 438
Number of extensions: 2252
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)