Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K02
         (875 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01810.1 68417.m00238 protein transport protein-related relat...    31   1.0  
At5g20750.1 68418.m02466 Ulp1 protease family protein contains P...    31   1.3  
At3g32400.1 68416.m04142 formin homology 2 domain-containing pro...    29   5.4  
At5g26070.1 68418.m03102 hydroxyproline-rich glycoprotein family...    28   9.4  
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro...    28   9.4  

>At4g01810.1 68417.m00238 protein transport protein-related related
           to Sec23 protein [Homo sapiens] gi|1296664|emb|CAA65774
          Length = 880

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/62 (33%), Positives = 27/62 (43%)
 Frame = +1

Query: 268 PRLKVPSRTSTQNTPPSKLRVPTSTLPLXGQPIDLAYVADENGYQPQGKPSAHPSPNSRG 447
           PRL  P      NTP     VP  T P   QP  +AY +  N   P   PS + + +S G
Sbjct: 81  PRLSTPPGPPVFNTPVKPAAVPFRTSPATPQP--MAY-SSANSSLPVSTPSFYSNGSSVG 137

Query: 448 DR 453
            +
Sbjct: 138 SQ 139


>At5g20750.1 68418.m02466 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 944

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 401 NPRXSHLPTPHPIPEAIARALAYXRGPPPQPLRSWKEKSSPTC 529
           +P  +     HPIPE  A+       PPP P + +   +S +C
Sbjct: 394 SPGLAETSQAHPIPEMSAKEPKQSSFPPPSPRKPFTRSASKSC 436


>At3g32400.1 68416.m04142 formin homology 2 domain-containing
           protein / FH2 domain-containing protein common family
           members: At2g43800, At3g25500, At5g48360, At4g15200,
           At3g05470, At3g07540, At5g07780, At5g07650 [Arabidopsis
           thaliana];
          Length = 488

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 413 SHLPTPHPIPEAIARALAYXRGPPPQPLRSWKEKSSPT 526
           S  P P P+P     A      PPP PL S  +  +PT
Sbjct: 29  SSSPLPPPLPPKKLLATTNTPPPPPPPLHSNSQMGAPT 66


>At5g26070.1 68418.m03102 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965; similar to root nodule extensin
           [Pisum sativum] gi|15021750|gb|AAK77902; Common family
           members: At5g19800, At5g57070, At1g72790 [Arabidopsis
           thaliana]
          Length = 102

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 419 LPTPHPIPEAIARALAYXRGPPPQPLRSW 505
           LP PHP P A      Y + PPP   + W
Sbjct: 72  LPIPHPSPHA--ERFYYRQSPPPPSGKPW 98


>At2g25050.1 68415.m02996 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 1111

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +2

Query: 413 SHLPTPHPIPEAIARALAYXRGPPPQPLRSWKEKSSPT 526
           S  P P P+P     A      PPP PL S     +PT
Sbjct: 618 SSSPLPPPLPPKKLLATTNPPPPPPPPLHSNSRMGAPT 655


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,219,655
Number of Sequences: 28952
Number of extensions: 158381
Number of successful extensions: 619
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)