Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_K01
         (861 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73090.1 68414.m08451 expressed protein                             29   4.0  
At1g07650.1 68414.m00821 leucine-rich repeat transmembrane prote...    28   7.0  

>At1g73090.1 68414.m08451 expressed protein
          Length = 306

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 255 LGPGXC*EKLWHDGRQLQRI 314
           +GPG C  + W +GR+LQ++
Sbjct: 272 IGPGVCVGQAWQEGRELQQV 291


>At1g07650.1 68414.m00821 leucine-rich repeat transmembrane protein
           kinase, putative similar to GB:AAC50043 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 37 (4), 587-596
           (1998))
          Length = 1014

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 200 WLSVRXKQLRN*GKKLNPPWPRXLLRKTLAR 292
           W S+R + L   G +L+ P+P+ L R T+ R
Sbjct: 134 WASMRLEDLSFMGNRLSGPFPKVLTRLTMLR 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,333,256
Number of Sequences: 28952
Number of extensions: 150387
Number of successful extensions: 259
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)