Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J23
         (886 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19119| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_27954| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_19119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1151

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 163  SSTIVFGDNAERVYSLDDKVKCCSRWLSIIIFNFCNNAYKI-VKREKMAPKDLQQDTTKQ 339
            SS + F ++  + YS   K+ CC  WL   +  FC   Y+   +  ++ P  L++    +
Sbjct: 947  SSEVDFWESMFKRYSTWTKLVCCIAWLRRSVVAFCYRKYRSHEEHTRLEPLKLEELDDAE 1006

Query: 340  RHLV 351
            R L+
Sbjct: 1007 RLLI 1010


>SB_27954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 567

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 278 TRLSKEKKWRLKIYNKTRPSNGISFEGKWRRVRRQVAN 391
           +RLS+  +   +I N   P+NG+S  G   ++R  +AN
Sbjct: 201 SRLSELDETVSRIGNSLEPANGLSLNGSREKLRDPIAN 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,298,411
Number of Sequences: 59808
Number of extensions: 254796
Number of successful extensions: 682
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)