Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J19
         (1352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    37   0.007
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   3.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   6.0  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -3

Query: 627 PPPXXFXXXXPPPXPPXGCXFFXPPPPP 544
           PPP       PPP PP G     PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 33.1 bits (72), Expect = 0.091
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = -3

Query: 630 PPPPXXFXXXXPPPXPPXGCXFFXPPPPP 544
           PPP        PPP PP       PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 3.4
 Identities = 13/32 (40%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
 Frame = -3

Query: 630 PPPPXXFXXXXPP---PXPPXGCXFFXPPPPP 544
           PPPP        P   P PP       PPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = -3

Query: 630 PPPPXXFXXXXPPPXPPXGCXFFXPPPPPXXXXKK 526
           PPPP       PP  PP       PPPPP    K+
Sbjct: 9   PPPPPPPPGFEPPSQPP-------PPPPPGYVKKR 36


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 630 PPPPXXFXXXXPPPXPPXGCXFFXPPPP 547
           PPPP         P PP G     PPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -3

Query: 636  AXPPPPXXFXXXXPPPXPPXGCXFFXPPPPP 544
            A  PPP       PP  PP        PPPP
Sbjct: 1704 APTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,477,063
Number of Sequences: 5004
Number of extensions: 22509
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 745191750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)