Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J18
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.20 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.4  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   9.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 19/66 (28%), Positives = 22/66 (33%)
 Frame = +1

Query: 625 KKKXXPPPPPXKXXKXXPXXGXXXPPSXXXXKKXLXXXPXXXXXXXXXXXXPPPPXXXXY 804
           KK+  PPPPP +  +  P  G     S           P            P PP     
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSS-------LPPPPPPPRSNAAGSIPLPPQGRSA 360

Query: 805 PPXPPP 822
           PP PPP
Sbjct: 361 PPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/35 (34%), Positives = 13/35 (37%)
 Frame = +3

Query: 720 KXPPPXPPPXXXXXXXXXXAPPPXXLXLPXXPPPP 824
           K PPP PP            P P    +   PPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP 764



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +3

Query: 726 PPPXPPPXXXXXXXXXXAPPPXXLXLPXXPPPP 824
           P P PPP           PPP        PPPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 19/64 (29%), Positives = 19/64 (29%)
 Frame = +2

Query: 632 KXXPPPPPXXXKXXXXXXXXXXPPLPPFXKKXSXXPPXXXXXXXXXXXXPPPXXLXXTXP 811
           K  PPPPP              PP  P        PP            PPP       P
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPI---MGGPPPPPPPPGVAGAGPPPP-------P 779

Query: 812 PPPP 823
           PPPP
Sbjct: 780 PPPP 783


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 105 NSFMIAVFVTVTTXTCMAESKA 40
           NSF+  VF+T+T  T    SKA
Sbjct: 812 NSFLSKVFITITMLTLFLGSKA 833


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,915
Number of Sequences: 5004
Number of extensions: 23968
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)