Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J17
         (901 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)                      30   2.9  
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_19950| Best HMM Match : AIP3 (HMM E-Value=1.7)                      29   3.9  
SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)                  29   5.1  
SB_46258| Best HMM Match : Vicilin_N (HMM E-Value=4.7)                 29   6.8  
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               28   8.9  
SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
          Length = 260

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 341 W*AKSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMT 207
           W +   +F++  SI  + A+L     F F    H+  AV+YS  T
Sbjct: 127 WQSSRFMFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRT 171


>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +1

Query: 220 YETAIAKCSEYLKEK--KGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFP 387
           Y + I K  E+ KEK  KG+  K    R  E GKR     A     +D  E +K +FP
Sbjct: 261 YPSLIDKLQEHEKEKELKGKRKKSKTSRSPEKGKREEEKDALLKQEEDEIERMKQFFP 318


>SB_19950| Best HMM Match : AIP3 (HMM E-Value=1.7)
          Length = 427

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = +2

Query: 509 TKPARKSPGSLPPCLENNRVYFKIMSTEDKQY-----LKLDNTKGSSDDRIIYGDSTADT 673
           TKP R SPG+ PP + N+     ++S  +K Y      K       SDD ++ G S    
Sbjct: 118 TKP-RSSPGAYPPTMRNSYSLDDVVSALEKSYETGVQFKDYLPSMESDDSLLQGSSVTSV 176

Query: 674 FKHH 685
              H
Sbjct: 177 DSAH 180


>SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)
          Length = 492

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 683 HWYLEPSMYESDVMFFVYNREYNSVMTLX*RYGRQ 787
           HW LE  +Y+ DV  F Y  E    +     YG++
Sbjct: 232 HWALEHPLYQWDVTSFEYQNEVKEAVKFMRDYGKK 266


>SB_46258| Best HMM Match : Vicilin_N (HMM E-Value=4.7)
          Length = 406

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 472 QNHNKIAFGDSKDKTSKKVSWKFTPVFGKQQSLLQDHVHRGQ 597
           +   K+ + D++DK  +K++W  T   G+Q+    D   +GQ
Sbjct: 9   KRRQKMTWDDTRDKRRQKMTWDDTQDEGRQKMTRDDMWDKGQ 50


>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 250 YLKEKKGEVIKEAVKRLIENGKRNTMDFAY 339
           + +E+ GE   EA KRLI+ GK+  M   Y
Sbjct: 676 FREEEDGESFAEAKKRLIKQGKQQIMFLLY 705


>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 466 DQQNHNKIAFGDSKDKT-SKKVSWKFTPVFGKQQSLLQDHVHRGQTVPEAR*HERF 630
           D+ +  + A G  +  T   + S K +  FG  + L +  +HRG+ V + R  ER+
Sbjct: 320 DKHDDGRTAIGRFQAPTYDSRPSEKMSYTFGTAEPLRKSSLHRGKPVEKTRAKERY 375


>SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
 Frame = +2

Query: 485 KLHSVTPKTKPARKSPGSLPPCLENNRVYFKIMSTE-DKQYLKLDNTK---GSSDDRIIY 652
           +L   TP +K +  S   +P    +  V  KI     DK+Y K    K   G    R   
Sbjct: 642 RLGETTPSSKKSEISVDDIPVANLDLPVSLKISGLSVDKKYKKTKKKKRRKGRHGSRADD 701

Query: 653 GDSTADTFKHHWY 691
            D   D F+HH Y
Sbjct: 702 SDDNDDGFEHHKY 714


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,264,265
Number of Sequences: 59808
Number of extensions: 519359
Number of successful extensions: 1592
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)