Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J17
         (901 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical pr...    34   0.16 
AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    32   0.64 
Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z74029-4|CAA98429.2|  522|Caenorhabditis elegans Hypothetical pr...    30   2.0  
DQ523831-1|ABF71876.1|  522|Caenorhabditis elegans P21-activated...    30   2.0  
Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z19158-3|CAA79572.2|  305|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   4.5  
Z22180-4|CAA80178.1|  312|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fb...    28   7.9  
AL023835-5|CAA19490.1|  471|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical
           protein F15A4.8b protein.
          Length = 808

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = +3

Query: 543 PRVWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTT 686
           P V  TT   S + PP  ++T + +T+      V ST IAP+T  +TT
Sbjct: 423 PDVTSTTTTKSSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTT 470


>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 193 LYMSVVIGEYETAIA-KCSEYLKEKKGEVIKEAVKRLIE 306
           LYM   +G+Y+   A KC +Y K+  G+   EA++  I+
Sbjct: 87  LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125


>Z54342-6|CAA91148.1|  459|Caenorhabditis elegans Hypothetical
           protein C08H9.11 protein.
          Length = 459

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +1

Query: 247 EYLKEKKGEVIKEA-VKRLIENGKRNTMDFAYQLWTKDGKEIVKSY--FPIQFRVIFTEQ 417
           EY +    E  +   VK ++   K+N +D     WT+   E +KSY  F  + R  FTE 
Sbjct: 187 EYSRLVSNETSRNVFVKSIVSFFKKNDIDGIEIFWTRPKYEDIKSYSSFIQELRSAFTE- 245

Query: 418 TVKLINKRDHHALKLI 465
             K  N+++ + + LI
Sbjct: 246 LQKRWNRKNEYIISLI 261


>Z74029-4|CAA98429.2|  522|Caenorhabditis elegans Hypothetical
           protein C45B11.1a protein.
          Length = 522

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 284 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTAR 123
           ++I  P  SFRY+  L   ++ SPM ++  S S   S+     V + ++ H+ R
Sbjct: 76  TVIRGPSSSFRYNSPLPFGMTNSPMPSVARSNSLRISATASPVVNVSSARHSFR 129


>DQ523831-1|ABF71876.1|  522|Caenorhabditis elegans P21-activated
           kinase PAK-2 protein.
          Length = 522

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -3

Query: 284 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTAR 123
           ++I  P  SFRY+  L   ++ SPM ++  S S   S+     V + ++ H+ R
Sbjct: 76  TVIRGPSSSFRYNSPLPFGMTNSPMPSVARSNSLRISATASPVVNVSSARHSFR 129


>Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical
           protein F15A4.8a protein.
          Length = 755

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +3

Query: 558 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTT 686
           TTE  S + PP  ++T + +T+      V ST IAP+T  +TT
Sbjct: 393 TTE--SSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTT 433


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 555 KTTEFTSRSCP-PRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGT 692
           KTT FT+   P P T ST +S T  V   + S+T     TP   T T
Sbjct: 434 KTTIFTTTPVPCPTTTSTTTSATTLVPTTSSSTTTTTTTTPVPVTST 480


>Z19158-3|CAA79572.2|  305|Caenorhabditis elegans Hypothetical
           protein T23G5.6 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 512 KPARKSPGSLPPCLENNRVYFKIMSTEDKQYLKLDNTKGSSD 637
           KP +K P  +PP   N   +  I S E +  LK      SSD
Sbjct: 106 KPYQKDPEPMPPICTNGNGFLDINSQEHENNLKRGYESDSSD 147


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -2

Query: 279 DNLSLLFLQIFRAFGDSGLVFTNDDTHIQLLRQYVISSWCKCGVRSQRTHGEDEG 115
           DN + +  Q FR+ G S +     +  +       ISSW +C  +     GEDEG
Sbjct: 795 DNFTCMCAQGFRSEGRSCVSECKPNDFVCTKTYKCISSWWRCDGQDDCGDGEDEG 849


>Z22180-4|CAA80178.1|  312|Caenorhabditis elegans Hypothetical
           protein K11H3.3 protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 271 EVIKEAVKRLIENGKRNTMDFAYQLWTKDG 360
           +V+K  ++ L     +NT+D A Q+W K+G
Sbjct: 242 DVVKTRMQGLEAKKYKNTLDCAMQIWKKEG 271


>U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 9 protein.
          Length = 703

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +1

Query: 187 EQLYMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 366
           E+ Y   ++GE E  + KC   +K++ G      ++++IE  +   + F    +TK+  +
Sbjct: 440 EEKYQHEILGEMEGQVLKC---VKDQNG---NHVIQKVIERVEPERLQFIIDAFTKNNSD 493

Query: 367 IV--KSYFPIQFRVI 405
            V   S  P   RVI
Sbjct: 494 NVYTLSVHPYGCRVI 508


>AL023835-5|CAA19490.1|  471|Caenorhabditis elegans Hypothetical
           protein Y37A1B.5 protein.
          Length = 471

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 512 KPARKSPGSLPPCLENNRVYFKIMSTEDKQYLK 610
           KP  K    + PCL ++R+Y   +  E K YL+
Sbjct: 86  KPTEKRSHLIVPCLNSDRIYIINVENERKIYLE 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,328,794
Number of Sequences: 27780
Number of extensions: 375406
Number of successful extensions: 1366
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)