Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J16
         (890 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57846-1|AAB02265.1|   51|Homo sapiens ribosomal protein L39 pro...    93   1e-18
D79205-1|BAA11465.1|   51|Homo sapiens ribosomal protein L39 pro...    93   1e-18
BC070205-1|AAH70205.1|   51|Homo sapiens ribosomal protein L39 p...    93   1e-18
BC001019-1|AAH01019.1|   51|Homo sapiens ribosomal protein L39 p...    93   1e-18
AB061835-1|BAB79473.1|   51|Homo sapiens ribosomal protein L39 p...    93   1e-18
AB209077-1|BAD92314.1|   70|Homo sapiens ribosomal protein L39 v...    90   9e-18
L05096-1|AAC15859.1|   51|Homo sapiens ribosomal protein L39 pro...    88   5e-17
BC012328-1|AAH12328.1|   51|Homo sapiens ribosomal protein L39-l...    88   5e-17
AF548529-1|AAN52397.1|   51|Homo sapiens ribosomal protein L39-2...    88   5e-17
AB063610-1|BAC19837.1|   51|Homo sapiens ribosomal protein L39-l...    88   5e-17
AB063607-1|BAC19834.1|   29|Homo sapiens ribosomal protein L39-l...    52   4e-06

>U57846-1|AAB02265.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 93.1 bits (221), Expect = 1e-18
 Identities = 41/51 (80%), Positives = 45/51 (88%)
 Frame = +1

Query: 85  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 237
           MS+HK F IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 1   MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>D79205-1|BAA11465.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 93.1 bits (221), Expect = 1e-18
 Identities = 41/51 (80%), Positives = 45/51 (88%)
 Frame = +1

Query: 85  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 237
           MS+HK F IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 1   MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>BC070205-1|AAH70205.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 93.1 bits (221), Expect = 1e-18
 Identities = 41/51 (80%), Positives = 45/51 (88%)
 Frame = +1

Query: 85  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 237
           MS+HK F IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 1   MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>BC001019-1|AAH01019.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 93.1 bits (221), Expect = 1e-18
 Identities = 41/51 (80%), Positives = 45/51 (88%)
 Frame = +1

Query: 85  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 237
           MS+HK F IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 1   MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>AB061835-1|BAB79473.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 93.1 bits (221), Expect = 1e-18
 Identities = 41/51 (80%), Positives = 45/51 (88%)
 Frame = +1

Query: 85  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 237
           MS+HK F IKR LAKK KQNRPIPQW+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 1   MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51


>AB209077-1|BAD92314.1|   70|Homo sapiens ribosomal protein L39
           variant protein.
          Length = 70

 Score = 90.2 bits (214), Expect = 9e-18
 Identities = 39/51 (76%), Positives = 45/51 (88%)
 Frame = +1

Query: 85  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 237
           MS+HK F IK+ LAKK KQNRPIPQW+RM+TGN IRYN+KRRHW+RTKL L
Sbjct: 20  MSSHKTFKIKQFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWKRTKLGL 70


>L05096-1|AAC15859.1|   51|Homo sapiens ribosomal protein L39
           protein.
          Length = 51

 Score = 87.8 bits (208), Expect = 5e-17
 Identities = 38/51 (74%), Positives = 44/51 (86%)
 Frame = +1

Query: 85  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 237
           MS+HK F IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 1   MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51


>BC012328-1|AAH12328.1|   51|Homo sapiens ribosomal protein L39-like
           protein.
          Length = 51

 Score = 87.8 bits (208), Expect = 5e-17
 Identities = 38/51 (74%), Positives = 44/51 (86%)
 Frame = +1

Query: 85  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 237
           MS+HK F IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 1   MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51


>AF548529-1|AAN52397.1|   51|Homo sapiens ribosomal protein L39-2
           protein.
          Length = 51

 Score = 87.8 bits (208), Expect = 5e-17
 Identities = 38/51 (74%), Positives = 44/51 (86%)
 Frame = +1

Query: 85  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 237
           MS+HK F IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 1   MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51


>AB063610-1|BAC19837.1|   51|Homo sapiens ribosomal protein L39-like
           protein.
          Length = 51

 Score = 87.8 bits (208), Expect = 5e-17
 Identities = 38/51 (74%), Positives = 44/51 (86%)
 Frame = +1

Query: 85  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKLKL 237
           MS+HK F IKR LAKK KQNRPIPQW++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 1   MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51


>AB063607-1|BAC19834.1|   29|Homo sapiens ribosomal protein L39-like
           protein.
          Length = 29

 Score = 51.6 bits (118), Expect = 4e-06
 Identities = 22/29 (75%), Positives = 25/29 (86%)
 Frame = +1

Query: 85  MSAHKXFIIKRKLAKKLKQNRPIPQWVRM 171
           MS+HK F IKR LAKK KQNRPIPQW++M
Sbjct: 1   MSSHKTFTIKRFLAKKQKQNRPIPQWIQM 29


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,969,786
Number of Sequences: 237096
Number of extensions: 1183418
Number of successful extensions: 4680
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4667
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11437206932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)