Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J16
         (890 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31985.1 68417.m04549 60S ribosomal protein L39 (RPL39C)            91   7e-19
At3g02190.1 68416.m00196 60S ribosomal protein L39 (RPL39B) simi...    89   4e-18
At2g25210.1 68415.m03017 60S ribosomal protein L39 (RPL39A)            82   4e-16
At1g52510.1 68414.m05928 hydrolase, alpha/beta fold family prote...    28   9.6  

>At4g31985.1 68417.m04549 60S ribosomal protein L39 (RPL39C)
          Length = 51

 Score = 91.5 bits (217), Expect = 7e-19
 Identities = 37/49 (75%), Positives = 44/49 (89%)
 Frame = +1

Query: 85  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 231
           M +HK F+IK+KL KK++QNRPIP W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 49


>At3g02190.1 68416.m00196 60S ribosomal protein L39 (RPL39B) similar
           to ribosomal protein L39 GB:P51424 [Arabidopsis
           thaliana]
          Length = 51

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 36/49 (73%), Positives = 43/49 (87%)
 Frame = +1

Query: 85  MSAHKXFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 231
           M +HK F+IK+KL KK++QNRPIP W+R+RT N IRYNAKRRHWRRTKL
Sbjct: 1   MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKL 49


>At2g25210.1 68415.m03017 60S ribosomal protein L39 (RPL39A) 
          Length = 44

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 33/42 (78%), Positives = 39/42 (92%)
 Frame = +1

Query: 106 IIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 231
           +IK+KL KK++QNRPIP W+R+RT NTIRYNAKRRHWRRTKL
Sbjct: 1   MIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKL 42


>At1g52510.1 68414.m05928 hydrolase, alpha/beta fold family protein
           low similarity to SP|P22643 Haloalkane dehalogenase (EC
           3.8.1.5) {Xanthobacter autotrophicus}; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 380

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 222 PSPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFE 79
           PS V  L+++++ ++ + P P     +   LFG+F   N  L  R  E
Sbjct: 220 PSKVEKLAILNSPLTVSSPVPGLFKQLRIPLFGEFTCQNAILAERFIE 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,597,306
Number of Sequences: 28952
Number of extensions: 154836
Number of successful extensions: 431
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)