Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J14
         (849 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61620.1 68418.m07732 myb family transcription factor contain...    29   3.0  
At3g28650.1 68416.m03576 DC1 domain-containing protein  similar ...    28   9.0  

>At5g61620.1 68418.m07732 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 317

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
 Frame = +2

Query: 290 DDNKPHVIVAVRGSYSYTNTD---------GKPETITYFADETGYHAQG*IYS-SGRLRH 439
           D  +P  + A+R S S  N D         G  + I    D+TGYH+ G I+S  G+  H
Sbjct: 44  DPIRPPEVTALRKSLSLGNLDALLANDESNGSGDPIAA-VDDTGYHSDGQIHSKKGKTAH 102

Query: 440 ELNF*IPW 463
           E     PW
Sbjct: 103 EKKKGKPW 110


>At3g28650.1 68416.m03576 DC1 domain-containing protein  similar to
           hypothetical protein GI:4204272 from [Arabidopsis
           thaliana] contains weak PHD zinc finger motifs contains
           weak PHD zinc finger motifs DC1 domain, a divergent
           protein kinase C domain of unknown function.
          Length = 665

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 510 HPPHSLVTRLLI*CSLXYFFVRXXXYLXXFQYVMHKD 620
           HP H +  RL + C + Y F R   +    + V+HK+
Sbjct: 126 HPLHFISFRLHLQCDVCYMFRRKGYFCFQCKLVVHKE 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,750,926
Number of Sequences: 28952
Number of extensions: 215791
Number of successful extensions: 546
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)