Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_J13
(1218 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 37 0.037
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 35 0.15
12_02_1174 - 26696869-26698191 32 0.79
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797 32 0.79
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 32 0.79
02_01_0302 - 2021221-2023305 31 1.4
04_04_1125 + 31085106-31085714 31 2.4
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 30 4.2
11_06_0610 - 25449085-25453284 29 5.6
02_05_0686 - 30900748-30902167,30903442-30904742 29 5.6
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 29 7.4
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 29 9.8
07_03_1147 + 24349811-24350161,24351031-24351366,24353260-243533... 29 9.8
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 36.7 bits (81), Expect = 0.037
Identities = 19/56 (33%), Positives = 20/56 (35%)
Frame = +1
Query: 481 PPPPRXTXPXPYVKXALXXPXPPXPXXXXQXXTXGPSPXTXPLXXTPRXXXLXXLP 648
PPPP P P + A P PP P P P P T R L LP
Sbjct: 355 PPPPPPPPPPPKLNTAPKPPPPPPPPPSVPSNNNLPKPAEPPAVPTSRRRLLKPLP 410
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 34.7 bits (76), Expect = 0.15
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +2
Query: 434 SPTEXXXPXXXPTXXGPPPXEXXRPDXT*SXPXXXXPPPGPXXP 565
SP++ P PT PPP P + + P PPP P P
Sbjct: 528 SPSDRKLPSPSPTAAAPPPPPPPPPPPSGNKPAFSPPPPPPPPP 571
Score = 29.5 bits (63), Expect = 5.6
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +1
Query: 481 PPPPRXTXPXPYVKXALXXPXPPXPXXXXQXXTXGPSPXTXPL 609
PPPP P P P PP P P P PL
Sbjct: 585 PPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPL 627
Score = 29.5 bits (63), Expect = 5.6
Identities = 16/57 (28%), Positives = 17/57 (29%)
Frame = +3
Query: 480 APPPXKXXAXTXRKAGPXXXXPPXAPXXPXXXDXXAVSXXXPPXXXX*TXXXXXPPP 650
APPP R GP PP P P + PP PPP
Sbjct: 711 APPPPPPPPPANRSNGPSAPAPPLPPPLPAAANKRNPPAPPPPPLMTGKKAPAPPPP 767
>12_02_1174 - 26696869-26698191
Length = 440
Score = 32.3 bits (70), Expect = 0.79
Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Frame = +3
Query: 483 PPPXKXXAXTXRKAGPXXXXPPXAPXXPXXXDXXAVSXXXPPXXXX*TXXXXXPPPXXRX 662
PPP + R P PP +P P D + + PP PPP +
Sbjct: 248 PPPPRAPVKMPRVLEPKPSPPPPSPLPPPPEDYWSPTAVTPPEPTKPKPPPPSPPPPPQQ 307
Query: 663 XA-XXXXPXPHXXPXP 707
+ P P P P
Sbjct: 308 PSQRYWTPPPAITPEP 323
>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
Length = 216
Score = 32.3 bits (70), Expect = 0.79
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 481 PPPPRXTXPXPYVKXALXXPXPPXP 555
PPPP P P K AL P PP P
Sbjct: 51 PPPPYCVYPPPPTKPALPAPLPPTP 75
>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 32.3 bits (70), Expect = 0.79
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +1
Query: 481 PPPPRXTXPXPYVKXALXXPXP-PXPXXXXQXXTXGPSPXTXP 606
PPPP P P+ + + P P P P Q + P P + P
Sbjct: 967 PPPPPNVAPPPFTRQDIPPPPPSPPPLPITQPPSVPPPPNSPP 1009
>02_01_0302 - 2021221-2023305
Length = 694
Score = 31.5 bits (68), Expect = 1.4
Identities = 19/62 (30%), Positives = 22/62 (35%)
Frame = +2
Query: 425 PRXSPTEXXXPXXXPTXXGPPPXEXXRPDXT*SXPXXXXPPPGPXXPXXXXXXGRLRXPA 604
P+ +PT P T PPP RPD PPPG P P+
Sbjct: 534 PQSTPTHPSYPSPPVTYTPPPPTSADRPD------VRFAPPPGSYGPIPSTPPSSGSPPS 587
Query: 605 PS 610
PS
Sbjct: 588 PS 589
>04_04_1125 + 31085106-31085714
Length = 202
Score = 30.7 bits (66), Expect = 2.4
Identities = 17/47 (36%), Positives = 18/47 (38%)
Frame = +2
Query: 425 PRXSPTEXXXPXXXPTXXGPPPXEXXRPDXT*SXPXXXXPPPGPXXP 565
P +PT P PT PPP P T P PPP P P
Sbjct: 47 PPPTPTPAT-PTTPPTPWTPPPATPTPPTPTPWTPTPATPPPTPATP 92
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 29.9 bits (64), Expect = 4.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 481 PPPPRXTXPXPYVKXALXXPXPP 549
PPPPR P P +K P PP
Sbjct: 368 PPPPRPPPPPPPIKKGAPPPAPP 390
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.5 bits (63), Expect = 5.6
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Frame = +2
Query: 425 PRXSPTEXXXPXXX--PTXXGPPPXEXXRPDXT*SXPXXXXPPPGPXXP 565
P SP P PT GPPP E P+ P P P P
Sbjct: 439 PEKSPAYEEPPAAPSTPTSHGPPPPEEESPEEPPEEPTPSPTPSSPESP 487
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.5 bits (63), Expect = 5.6
Identities = 15/61 (24%), Positives = 19/61 (31%)
Frame = +2
Query: 425 PRXSPTEXXXPXXXPTXXGPPPXEXXRPDXT*SXPXXXXPPPGPXXPXXXXXXGRLRXPA 604
P+ + P PPP + P P PP GP P G+ P
Sbjct: 319 PKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378
Query: 605 P 607
P
Sbjct: 379 P 379
Score = 29.1 bits (62), Expect = 7.4
Identities = 20/78 (25%), Positives = 23/78 (29%), Gaps = 2/78 (2%)
Frame = +3
Query: 480 APPPXKXXAXTXRKAGPXXXXPPX--APXXPXXXDXXAVSXXXPPXXXX*TXXXXXPPPX 653
+P P A P PP +P P AV+ PP PPP
Sbjct: 270 SPSPAPAPAARPASPSPSLPLPPGRESPSRPQSIAAAAVASPAPPPPPPPKPAAAAPPPP 329
Query: 654 XRXXAXXXXPXPHXXPXP 707
A P P P P
Sbjct: 330 PPPKAAPPPPPPKGPPPP 347
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 29.1 bits (62), Expect = 7.4
Identities = 14/47 (29%), Positives = 16/47 (34%)
Frame = +1
Query: 484 PPPRXTXPXPYVKXALXXPXPPXPXXXXQXXTXGPSPXTXPLXXTPR 624
PPP + P P A P PP P PL TP+
Sbjct: 431 PPPPPSHPTPITSVAPAPPPPPPAAAAAAASQPSPQATKSPLPATPQ 477
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 28.7 bits (61), Expect = 9.8
Identities = 17/52 (32%), Positives = 19/52 (36%)
Frame = +2
Query: 455 PXXXPTXXGPPPXEXXRPDXT*SXPXXXXPPPGPXXPXXXXXXGRLRXPAPS 610
P P PPP R + T P PPP P P RL P P+
Sbjct: 324 PSNPPPAPPPPPPPPSRFNNT--TPKPPPPPPPPEPPTGPVSARRLLRPLPA 373
>07_03_1147 +
24349811-24350161,24351031-24351366,24353260-24353376,
24353585-24353647,24354066-24354139,24354216-24354306,
24354791-24354850,24355270-24355462,24356242-24356522,
24357435-24357536,24357664-24357774,24358410-24358475,
24358562-24358660,24358757-24358788,24359171-24359274,
24359380-24359507,24359625-24359756,24360051-24360359,
24360887-24361071,24361161-24361263,24361407-24361552,
24361748-24361827,24361901-24362103
Length = 1121
Score = 28.7 bits (61), Expect = 9.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 481 PPPPRXTXPXPYVKXALXXPXPPXP 555
PPPP+ T P P + P PP P
Sbjct: 47 PPPPQPTLPPPPPRTLPPPPPPPPP 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,046,096
Number of Sequences: 37544
Number of extensions: 296374
Number of successful extensions: 1291
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3736328292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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