Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J13
         (1218 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)                   31   1.9  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  29   7.5  
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)                 29   9.9  

>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
          Length = 514

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 17/52 (32%), Positives = 17/52 (32%)
 Frame = +2

Query: 410 GARXXPRXSPTEXXXPXXXPTXXGPPPXEXXRPDXT*SXPXXXXPPPGPXXP 565
           GA   P   P     P   P   G PP     P      P    PPPGP  P
Sbjct: 360 GAAPPPPPPPPVGGPPPPPPPIEGRPPSSLGNPPPP-PPPGRGAPPPGPMIP 410


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 15/52 (28%), Positives = 15/52 (28%)
 Frame = +2

Query: 410 GARXXPRXSPTEXXXPXXXPTXXGPPPXEXXRPDXT*SXPXXXXPPPGPXXP 565
           G    P   P     P   P    PPP     P      P    PPP P  P
Sbjct: 360 GINMSPPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPP 411



 Score = 29.1 bits (62), Expect = 7.5
 Identities = 15/47 (31%), Positives = 15/47 (31%)
 Frame = +1

Query: 481 PPPPRXTXPXPYVKXALXXPXPPXPXXXXQXXTXGPSPXTXPLXXTP 621
           PPPP    P P        P PP P    Q     P P   P    P
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPP 411



 Score = 29.1 bits (62), Expect = 7.5
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +2

Query: 425 PRXSPTEXXXPXXXPTXXGPPPXEXXRPDXT*SXPXXXXPPPGPXXP 565
           P   P     P   P    PPP +   P      P    PPP P  P
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPP 417


>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
          Length = 392

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = +2

Query: 425 PRXSPTEXXXPXXXPTXXGPPP-XEXXRPDXT*SXPXXXXPP-PGPXXP 565
           PR        P   PT  GPPP  +  RP    S P    PP PGP  P
Sbjct: 326 PRGDRGPRGPPSGVPTSGGPPPGHQGLRP----SGPNNQGPPGPGPNMP 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,374,146
Number of Sequences: 59808
Number of extensions: 198113
Number of successful extensions: 752
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3787024785
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)