Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J13
         (1218 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    30   2.9  
Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    29   6.7  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   6.7  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
 Frame = +1

Query: 481 PPPPRXTXPXPYVKXAL---XXPXPPXPXXXXQXXTXGPSPXTXP 606
           PPPP    P PYV+ +        PP P    Q     P+P   P
Sbjct: 27  PPPPPPPKPAPYVEQSAQPQQTAPPPPPAPYPQQAVPAPAPPPAP 71


>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
 Frame = +2

Query: 425 PRXSPTEXXXPXXXPTXXGPPPXEXXRPDXT*SXPXXXXPP--PGPXXPXXXXXXGRLRX 598
           P   P +   P   P    PPP E  + +   + P    PP    P  P       RL  
Sbjct: 383 PTTEPPKIEPPRTEPPKTEPPPTEPPKTEPPKTTPPKTEPPTTEPPNIPYCWQQQSRLFA 442

Query: 599 PAP 607
           P+P
Sbjct: 443 PSP 445


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +1

Query: 481  PPPPRXTXPXPYVKXALXXPXPPXPXXXXQXXTXGPSPXTXP 606
            PPPP    P P        P PP P    +  T  P P   P
Sbjct: 1338 PPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLPVPPP 1379


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,788,566
Number of Sequences: 27780
Number of extensions: 167069
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3359895476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)