BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP04_F_J12 (873 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 28 1.5 SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 27 3.5 SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyce... 27 4.6 >SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe|chr 1|||Manual Length = 697 Score = 28.3 bits (60), Expect = 1.5 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = +3 Query: 249 FVYLLYYTNSQFI*KNILDLF 311 F++LLY+T ++ +N+LDLF Sbjct: 429 FMHLLYHTTLTYLLRNVLDLF 449 >SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1|Schizosaccharomyces pombe|chr 3|||Manual Length = 948 Score = 27.1 bits (57), Expect = 3.5 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = +1 Query: 118 IYGERVSLSVG--FGQPYISPIVGYSFVIFDIAFRINKILSGTDNFLFIYYTIRI 276 IY + L + + PY I+ Y+ + F +AF N G D+ + Y T R+ Sbjct: 397 IYNLELQLGIEKEYQYPYFESIMWYTAIHFYLAFPDNSSRDGIDDIIAEYETGRL 451 >SPBC6B1.12c |sus1||SAGA complex subunit Sus1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 108 Score = 26.6 bits (56), Expect = 4.6 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Frame = -1 Query: 393 KVIGRLY-TGSFFRHXXXXXXXXXXXIAKTNLKYFFK*IVNSYSIIDKQKIVSSA 232 K++ +LY TG + R T L+ + + IVNS S ID QK+ SA Sbjct: 14 KIVEQLYETGDYERLANELEYKLESCGWTTQLRDYTRGIVNSDSKIDFQKLYESA 68 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,685,556 Number of Sequences: 5004 Number of extensions: 46213 Number of successful extensions: 87 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 87 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 436477420 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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