Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J12
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.7  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          22   6.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   8.5  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 291 KNILDLFWQLTVISVTHTKL 350
           KNI +LFW +   +V H +L
Sbjct: 36  KNIYELFWHVDQPTVYHPEL 55


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 291 KNILDLFWQLTVISVTHTKL 350
           KNI +LFW +   +V H +L
Sbjct: 36  KNIYELFWHVDQPTVYHPEL 55


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 626 KKILTSLWID*KKLVVVSQIIVNR 697
           KK+L S+W D K +V    +  NR
Sbjct: 64  KKVLLSVWWDYKGIVYFELLSPNR 87


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 626 KKILTSLWID*KKLVVVSQIIVNR 697
           KK+L S+W D K +V    +  NR
Sbjct: 186 KKVLLSVWWDYKGIVYFELLPPNR 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,625
Number of Sequences: 438
Number of extensions: 3446
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)