Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J11
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    29   0.90 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   2.1  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.7  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.7  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    27   3.6  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    26   6.3  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   8.4  
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p...    26   8.4  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 222 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 365
           ET   K S   K +K  +   + +++++  K NT++ A Q W+K  KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 189 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 305
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/53 (26%), Positives = 22/53 (41%)
 Frame = +1

Query: 511 KPARKSPGKFTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGDSTAD 669
           KP+RK    +T     N    ++     K  +  +N +GSS    +Y D   D
Sbjct: 259 KPSRKMSPAYTSSYRQNSPSSQVPPVSKKHVIIYENKEGSSSSESVYEDVFED 311


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +2

Query: 545 PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGT 691
           P   T+  TS S PP  NST + +T  V   + SST   P  P++T+ T
Sbjct: 279 PTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP-PPASTSST 325



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +2

Query: 545 PCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGT 691
           P   T+  TS S PP  NST + +T  V   + SST   P  P++T+ T
Sbjct: 333 PSTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP-PPASTSST 379


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 557 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSP 700
           +T  TS   PP T+   ++ T        ++T + P T  NTT T +P
Sbjct: 63  STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAP 110



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +2

Query: 536 SLPPCWKTTEFTSRSCPPRT--NST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPSMY 709
           ++PP   +   T+ + PP T  NST + +     V T  +TV+ P T  NTT  + P+ +
Sbjct: 95  TVPPT-TSLNTTTTTAPPTTHVNSTTTVVPPTTHVNT--TTVVPPTTHVNTTTVVPPTTH 151

Query: 710 ESDVMF 727
            +   F
Sbjct: 152 ANTTSF 157



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +2

Query: 539 LPPCWKTTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSP 700
           +PP   +   T+ + PP T+   ++       +  ++T   P T  N+T T+ P
Sbjct: 70  VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVP 123


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = -1

Query: 283 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKV 104
           SL+ S FFS  YSE   +   +  +   IYS S S  S L  ++ +  +    +    +V
Sbjct: 6   SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGS-LNPAIYVNWTEPWGQEDEVEV 64

Query: 103 XLHSWRSGXSLKAXQQTTQ 47
            + +W+    L A +   Q
Sbjct: 65  LIFNWKEIRKLGAFRSDDQ 83


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 681 VFEGVSGAITVDDTVIT 631
           V  G+ GAIT+DD++IT
Sbjct: 117 VAAGIEGAITLDDSIIT 133


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 426 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 518
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -1

Query: 325 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 146
           M F    ++   T   + +PF   R+  HL      S +T+ +Y+ +  T     ++++ 
Sbjct: 1   MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57

Query: 145 EASAHTARTKA 113
             +A  A T A
Sbjct: 58  NGAAKEAATAA 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,511,046
Number of Sequences: 5004
Number of extensions: 72194
Number of successful extensions: 250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)