Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J11
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0259 - 1996427-1998772                                           31   1.2  
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649     29   3.8  
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211...    29   3.8  
04_03_0694 + 18781776-18781994,18782475-18782648,18782743-187830...    29   5.0  
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944...    28   8.8  
03_02_0950 + 12661008-12662312,12662403-12662576                       28   8.8  
01_07_0312 + 42677752-42678561,42678701-42678910,42679597-426797...    28   8.8  

>03_01_0259 - 1996427-1998772
          Length = 781

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +3

Query: 402 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 506
           I  ++ V++ N   HHALKLI + +  +I  GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765


>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
          Length = 461

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 470 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 384
           +V    GVM P + +L  LLGE+++KL G
Sbjct: 7   IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35


>03_01_0273 -
           2107778-2108772,2108857-2109043,2109121-2110575,
           2110670-2111251
          Length = 1072

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
 Frame = -3

Query: 338 VGEVHGVPLAVFDQTLHGFLDNLSLLFLQIFRAFGDSG-----------LVFTNDDTHIQ 192
           V E  G+P+AV D  +    D +  +FL+        G           L   N D+ I 
Sbjct: 705 VDEFFGIPVAVRDDLVQDLADGMEAIFLEYISFLTSCGSKQSYLPSLPPLTRCNQDSKII 764

Query: 191 LLRQYVISSWCKCGVRSQRTHGEDEGKQSQXS 96
            L +   +  C+  V S R HG  +G+    S
Sbjct: 765 RLWKKAATP-CRAPVSSPRAHGHHQGQGGMAS 795


>04_03_0694 +
           18781776-18781994,18782475-18782648,18782743-18783057,
           18783791-18785569,18786334-18786651,18787052-18787105
          Length = 952

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 189 QLYMSVVI---GEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG 359
           +LY+ +++   G Y+ A+   S     + G  +KE  K L+E+    T++   +L T  G
Sbjct: 491 ELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVEILLRLCTDGG 550

Query: 360 KEIVK 374
             + +
Sbjct: 551 DPMTR 555


>09_06_0010 -
           20193577-20193921,20194014-20194160,20194239-20194495,
           20194619-20194826
          Length = 318

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 542 PPCWKTTEFTSRS-CPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSP 700
           PP   TT  T+ +  PP T S  S      +  T SSTV   +  + TT T SP
Sbjct: 256 PPAAPTTTKTAAAPAPPPTASWESFDLLSSMPSTSSSTVTTTMAAATTTTTTSP 309


>03_02_0950 + 12661008-12662312,12662403-12662576
          Length = 492

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 174 DVLAEQLYMSVVIGEYETAIAKCSEYLKEKKGEV 275
           +VL+ +      +GEY+ AIA CS+ L++ K  V
Sbjct: 411 EVLSSRASSYKEVGEYKKAIADCSKVLEKDKDNV 444


>01_07_0312 +
           42677752-42678561,42678701-42678910,42679597-42679704,
           42679915-42680010,42680090-42680182,42680276-42680386,
           42680482-42680514,42680592-42680642,42680960-42681037,
           42681145-42681165
          Length = 536

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 235 AIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVXLH 95
           A+  + S M T+ + C+AS +S +    ALE  A    ++ NK   +
Sbjct: 465 ALENNCSHMETVFHVCTASVTSEIAEDKALELIAKAVESRMNKAKFY 511


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,775,767
Number of Sequences: 37544
Number of extensions: 494847
Number of successful extensions: 1469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1469
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)