Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J11
         (898 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)                      30   2.9  
SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_13968| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)          28   8.9  

>SB_55418| Best HMM Match : GWT1 (HMM E-Value=1.5)
          Length = 260

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 340 W*AKSMVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMT 206
           W +   +F++  SI  + A+L     F F    H+  AV+YS  T
Sbjct: 127 WQSSRFMFIMRLSILSYAAALFHDQGFEFSLGLHILAAVAYSVRT 171


>SB_23612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1021

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +3

Query: 219 YETAIAKCSEYLKEK--KGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKEIVKSYFP 386
           Y + I K  E+ KEK  KG+  K    R  E GKR     A     +D  E +K +FP
Sbjct: 261 YPSLIDKLQEHEKEKELKGKRKKSKTSRSPEKGKREEEKDALLKQEEDEIERMKQFFP 318


>SB_38293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1732

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -1

Query: 247 SEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKANKVXLHSWRSGXSL 71
           S+ + I V+Y P    + + ++S + + G  V     AH+  +  N   LH   S  SL
Sbjct: 563 SQRVTITVNYKPENCSLTTNTSSNTYLKGDDVMFSCHAHSKPSTCNATLLHDGTSVTSL 621


>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 249 YLKEKKGEVIKEAVKRLIENGKRNTMDFAY 338
           + +E+ GE   EA KRLI+ GK+  M   Y
Sbjct: 676 FREEEDGESFAEAKKRLIKQGKQQIMFLLY 705


>SB_13968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +3

Query: 447 HALKLIDQQNHNKIAFGDSKDKTSKKVSWEVYPRVGKQQSLLQDHVHRGQTVPEAR*HER 626
           H  K +D   + + +F   KDK S    WE +P V    S   D  ++   +      ER
Sbjct: 571 HEKKALDLLMNVETSFFRGKDKASAWNVWEAFPEVSSTLSAFSDPPNKKTVLASIGTLER 630

Query: 627 F 629
           F
Sbjct: 631 F 631


>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
          Length = 734

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 538 FTPVLENNRVYFKIMSTEDKQYLKLDNTKGSSDDRIIYGD 657
           FT + E      K MS E+KQ  K DN KG S+ +   GD
Sbjct: 204 FTEMEEKIDEKVKEMSLEEKQPQKKDNQKGKSEKKKGKGD 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,132,854
Number of Sequences: 59808
Number of extensions: 574682
Number of successful extensions: 1731
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1731
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2574115416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)