Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J11
         (898 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05170.1 68415.m00544 vacuolar protein sorting 11 family prot...    31   1.0  
At1g62250.2 68414.m07023 expressed protein                             30   1.8  
At1g62250.1 68414.m07022 expressed protein                             30   1.8  
At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    29   5.5  
At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A...    29   5.5  
At1g64150.1 68414.m07267 expressed protein contains Pfam profile...    29   5.5  
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica...    28   7.3  
At3g04160.1 68416.m00440 expressed protein ; expression supporte...    28   9.7  
At2g25290.1 68415.m03025 octicosapeptide/Phox/Bem1p (PB1) domain...    28   9.7  

>At2g05170.1 68415.m00544 vacuolar protein sorting 11 family protein
           / VPS11 family protein similar to Vacuolar protein
           sorting 11 (hVPS11) (PP3476) (Swiss-Prot:Q9H270) [Homo
           sapiens]; similar to Vacuolar biogenesis protein END1
           (PEP5 protein) (Vacuolar protein sorting 11)
           (Swiss-Prot:P12868) [Saccharomyces cerevisiae]
          Length = 932

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = +3

Query: 210 IGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDG--KEIVKSYF 383
           +G Y+ A+   S     + G  I++  K LIE+  + T+D   +L T+ G    +  S  
Sbjct: 498 LGNYDEALQYVSSLEPSQAGVTIEQYGKILIEHKPKETIDILMRLCTEQGIPNGVFLSML 557

Query: 384 --PIQFRVIFTEQTVKLINKRDHHA 452
             P+ F  +F +    L++  + +A
Sbjct: 558 PSPVDFITVFVQHPHSLMHFLERYA 582


>At1g62250.2 68414.m07023 expressed protein
          Length = 223

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 106 LCLPSSSPCVRWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 234
           LC P  +  +RW  TP +  E+++ WR  C  +++    R ++
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWRGFCAVIANAYYIRGMA 222


>At1g62250.1 68414.m07022 expressed protein
          Length = 267

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 106 LCLPSSSPCVRWLLTPHLHQELMTYWRSSCI*VSSLVNTRPLS 234
           LC P  +  +RW  TP +  E+++ WR  C  +++    R ++
Sbjct: 181 LCTPQPT-VIRWSSTPSVSDEILSKWRGFCAVIANAYYIRGMA 222


>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase
           (ATHIM) identical to SP|P34881 DNA
           (cytosine-5)-methyltransferase AthI (EC 2.1.1.37)
           {Arabidopsis thaliana}
          Length = 1534

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 354 PLSITGRRSPWCSSCRFRSDASR 286
           PLS  GR S +C+SC+ R D  +
Sbjct: 869 PLSDIGRSSGFCTSCKIREDEEK 891


>At4g13290.1 68417.m02078 cytochrome P450 71A19, putative (CYP71A19)
           Identical to Cytochrome P450 (SP:Q9T0K0) [Arabidopsis
           thaliana]; similar to cytochrome P450LXXIA1, Persea
           americana, M32885
          Length = 490

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 452 GVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 360
           G  +P +  +D + G+DH   + + RFD+FL
Sbjct: 221 GEYIPSLSWIDKIRGQDHKMEEVDKRFDEFL 251


>At1g64150.1 68414.m07267 expressed protein contains Pfam profile
           PF01169: Uncharacterized protein family UPF0016
          Length = 370

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 672 GVSGAITVDDTVITRTFRVIELQVLFVLGGHDLEVNSV 559
           G  G +T+   V+ RTF  ++  + F  GG DL ++ +
Sbjct: 197 GALGIMTIISVVLGRTFHYVDEVLPFRFGGTDLPIDDI 234


>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P36607 DNA
           repair protein rad8 {Schizosaccharomyces pombe};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 1277

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 411 EQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSK--KVSWEVYPRVGKQQSLL 572
           ++ +K++  +     K ++Q+N +  + GDS   ++K  K+  E Y  VG +  +L
Sbjct: 255 DEVIKVLEDQPSEINKKLEQENDDLFSSGDSDGTSAKRRKMEMESYAPVGVESCIL 310


>At3g04160.1 68416.m00440 expressed protein ; expression supported
           by MPSS
          Length = 712

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 284 SREASDRKRQEEHHGLRLPVMDKGWKGNRQILLPHPV 394
           SR      ++E   G  +P  DK WKG  +  + +P+
Sbjct: 563 SRSPIGNDQKESDFGYSIPSTDKQWKGENRADIEYPI 599


>At2g25290.1 68415.m03025 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein low similarity to SP|Q99614
           Tetratricopeptide repeat protein 1 {Homo sapiens};
           contains Pfam profiles PF00564: PB1 domain, PF00515: TPR
           Domain
          Length = 697

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 195 YMSVVIGEYETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQ 341
           YM + +GEY  AI +C+  L E      K  +KR       N +DFA++
Sbjct: 100 YMQMGLGEYPNAINECNLAL-EASPRFSKALLKRARCYEALNKLDFAFR 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,852,010
Number of Sequences: 28952
Number of extensions: 395201
Number of successful extensions: 1291
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)