Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J10
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1105 + 9102059-9102167,9103770-9103907,9104125-9104267,910...    35   0.096
02_05_0620 - 30412004-30412429,30412509-30412646,30412729-304128...    31   0.89 
06_03_0627 + 22903346-22903523,22906010-22906152,22906235-229066...    30   2.1  
01_05_0545 + 23109920-23110040,23113363-23113505,23113626-231140...    29   6.3  

>06_01_1105 +
           9102059-9102167,9103770-9103907,9104125-9104267,
           9104362-9104515,9104610-9104839,9105382-9105471,
           9105606-9105779,9105873-9106010,9106212-9106349,
           9106450-9106511,9106744-9106972,9108531-9109364
          Length = 812

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +3

Query: 750 AVRAAXKAFDEGXWSKISARERA 818
           AV AA KAFDEG W K++A ER+
Sbjct: 111 AVHAARKAFDEGPWPKMTAYERS 133


>02_05_0620 -
           30412004-30412429,30412509-30412646,30412729-30412866,
           30412966-30413139,30413211-30413684,30413775-30413917,
           30414002-30414160,30414943-30415042
          Length = 583

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 750 AVRAAXKAFDEGXWSKISARER 815
           AV AA +AFDEG W +++A ER
Sbjct: 115 AVAAARRAFDEGPWPRMTAYER 136


>06_03_0627 +
           22903346-22903523,22906010-22906152,22906235-22906618,
           22906980-22907069,22907147-22907320,22907414-22907551,
           22907719-22907856,22907958-22908019,22908240-22908513
          Length = 526

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 750 AVRAAXKAFDEGXWSKISARER 815
           AV+AA +AFD G W ++S  ER
Sbjct: 88  AVKAAREAFDHGEWPRMSGSER 109


>01_05_0545 +
           23109920-23110040,23113363-23113505,23113626-23114009,
           23114106-23114219,23114310-23114483,23114608-23114745,
           23114884-23115021,23115094-23115155,23115268-23115541
          Length = 515

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 750 AVRAAXKAFDEGXWSKISARERA 818
           AV+AA +AF+ G W ++S  ER+
Sbjct: 69  AVKAAREAFEHGKWPRMSGYERS 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,961,308
Number of Sequences: 37544
Number of extensions: 311979
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)