Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J10
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.074
SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  

>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 35.1 bits (77), Expect = 0.074
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +2

Query: 137 EGDKLYITGLNKPAVVHEAGL-LVTAK*WS*AQHTEAKSNGKMINAQNFFKASEEKISIE 313
           +G ++ I GL++PA+VH+ G+ ++ +        T   + G+MI A  + +  E    +E
Sbjct: 569 KGCEVEIDGLDRPAIVHKDGMTIIGSDEKMLTVKTLQLAGGRMIEASKYGQEEEHMAPLE 628

Query: 314 LNSDE 328
           LN +E
Sbjct: 629 LNEEE 633


>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 232 LSLTPSFGSNK*AGFVYHGWFIKACYIQFISFG 134
           + ++P+ G      F+YHGW++    +Q +S G
Sbjct: 848 VDISPNTGKYVTCDFIYHGWWVLLSEVQIVSGG 880


>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 193 GFVYHGWFIKACYIQFISFGLIFRLPEGDPK 101
           GF+   WFI AC+    +F ++  LPE  PK
Sbjct: 203 GFIEPYWFIFACF-TLATFYVVVLLPESTPK 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,974,318
Number of Sequences: 59808
Number of extensions: 323166
Number of successful extensions: 666
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)