Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J10
         (858 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identica...    34   0.11 
At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial (...    34   0.11 
At1g43610.1 68414.m05006 NLI interacting factor (NIF) family pro...    28   6.9  
At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identic...    28   9.1  

>At3g48000.1 68416.m05233 aldehyde dehydrogenase (ALDH2) identical
           to aldehyde dehydrogenase [Arabidopsis thaliana]
           GI:8574427; similar to mitochondrial aldehyde
           dehydrogenase [Arabidopsis thaliana]
           gi|19850249|gb|AAL99612; identical to cDNA aldehyde
           dehydrogenase AtALDH2a GI:20530140
          Length = 538

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +3

Query: 750 AVRAAXKAFDEGXWSKISARERA 818
           AV+AA  AFDEG W K+SA ER+
Sbjct: 100 AVKAARTAFDEGPWPKMSAYERS 122


>At1g23800.1 68414.m03002 aldehyde dehydrogenase, mitochondrial
           (ALDH3) nearly identical to mitochondrial aldehyde
           dehydrogenase ALDH3 [Arabidopsis thaliana]
           gi|19850249|gb|AAL99612; contains Pfam profile PF00171:
           aldehyde dehydrogenase (NAD) family protein
          Length = 534

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 15/23 (65%), Positives = 18/23 (78%)
 Frame = +3

Query: 750 AVRAAXKAFDEGXWSKISARERA 818
           AV AA KAFDEG W K++A ER+
Sbjct: 96  AVAAARKAFDEGPWPKMTAYERS 118


>At1g43610.1 68414.m05006 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 255

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 227 AQHTEAKSNGKMINAQNFFKASEEKISIELNSDELKFVESCRE 355
           A+  E++SNG + N   F +   ++   +L   +L+ +  CR+
Sbjct: 210 AKKDESQSNGSLANVLKFLEVVHKRFEEDLGFKDLRLLIPCRQ 252


>At3g24503.1 68416.m03074 aldehyde dehydrogenase (ALDH1a) identical
           to aldehyde dehydrogenase ALDH1a [Arabidopsis thaliana]
           gi|20530143|gb|AAM27004
          Length = 501

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 750 AVRAAXKAFDEGXWSKISARERA 818
           AV AA  AFD G W +++  ERA
Sbjct: 62  AVNAARYAFDHGPWPRMTGFERA 84


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,847,285
Number of Sequences: 28952
Number of extensions: 232814
Number of successful extensions: 538
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)