Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J06
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0149 - 8801675-8804332                                           30   2.8  
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698...    28   8.5  

>11_02_0149 - 8801675-8804332
          Length = 885

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/63 (23%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
 Frame = -1

Query: 671 IHSNKTYNVKLKDELYKNI*FICLRFIIYYHNILKLHYIASLK---YISAHVYLITLMKA 501
           ++S K+ + KL  E+ ++    CL  ++ +HN+ K+H +   K    ++ H++ +T +K 
Sbjct: 437 VYSTKSSSSKLLLEIKEDHHLECLDEMVAFHNLSKIHELEVSKSPPLMNKHLHWLTSLKT 496

Query: 500 MTV 492
           + +
Sbjct: 497 LKI 499


>07_03_1727 +
           29068348-29068571,29069473-29069514,29069593-29069839,
           29069936-29070013,29070551-29070736,29070829-29071126,
           29071775-29072244
          Length = 514

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 178 RRGQRCSRAQVEALQEN*ESGTQRSRWINQSGSSYSRHRA 297
           +RG++ +RA+ EA +E    GT+R+R + +  +    HRA
Sbjct: 384 KRGEQMARAR-EAAREITPEGTERARVVGEEEAGPEHHRA 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,725,961
Number of Sequences: 37544
Number of extensions: 275535
Number of successful extensions: 534
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)