Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J05
         (885 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.0  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.4  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   2.4  
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    21   9.7  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   9.7  

>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 533 LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 402
           LP DS   L L V +  S  V LN++A++   T   V  +   F
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAEKIPTTSDAVPLIGTYF 278


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 533 LPADSRACLVLAVAVGRSAIVALNIIAQRQSETVALVHKLNRVF 402
           LP DS   L L V +  S  V LN++A++   T   V  +   F
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAEKIPTTSDAVPLIGTYF 278


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 533 LPADSRACLVLAVAVGRSAIVALNIIAQ 450
           LP DS   L L V +  S  V LN++A+
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAE 262


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 533 LPADSRACLVLAVAVGRSAIVALNIIAQ 450
           LP DS   L L V +  S  V LN++A+
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAE 262


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 533 LPADSRACLVLAVAVGRSAIVALNIIAQ 450
           LP DS   L L V +  S  V LN++A+
Sbjct: 235 LPPDSGEKLTLGVTILLSLTVFLNLVAE 262


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 137 MLQIPTSLTTFWRSSFTIASSSPITTVRLKRA 232
           +L IPT   T  +SSF+I+S  P T +   ++
Sbjct: 8   ILVIPTMARTPLKSSFSISSILPETALEAPKS 39


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 125 WHLCMLQIPTSLTTFWRSS 181
           +H+ M  +PT L +F++S+
Sbjct: 59  YHIFMHIVPTKLISFYKST 77


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 531 KLIALWENNKVYFKILNTERNQYLVL 608
           KL+ L  + +  + IL+ + N YLVL
Sbjct: 7   KLLLLDSSTQPNYLILSNKNNTYLVL 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,858
Number of Sequences: 336
Number of extensions: 3220
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)