Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J05
         (885 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein b...    33   0.19 
At5g56690.1 68418.m07076 F-box family protein contains F-box dom...    31   1.3  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    29   5.4  

>At1g60170.1 68414.m06778 pre-mRNA processing ribonucleoprotein
           binding region-containing protein similar to U4/U6
           snRNP-associated 61 kDa protein [Homo sapiens]
           GI:18249847; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 485

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +1

Query: 76  LDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKK 255
           +D   + P+ +I+ + V +L    S +P D+L++ L       D DSA +K     E K 
Sbjct: 154 VDLADLLPSAIIMVVSVTALTTKGSALPEDVLQKVLEACDRALDLDSARKKVLEFVESKM 213

Query: 256 SEVITNV 276
             +  N+
Sbjct: 214 GSIAPNL 220


>At5g56690.1 68418.m07076 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 552 NNKVYFKILNTERNQYLVLGVGTNWNGXHMAFGVNSVDSFRAQWYLQPAKYDNDVLFYIY 731
           N+K ++K    +  +YL +    N       F +NS+++FR +WY    + D D L  I+
Sbjct: 333 NSKSFYK---EKIGEYLPVSWSKNQGSVPKCF-LNSLETFRVKWYYSEEQEDRDFLSLIF 388


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/53 (22%), Positives = 26/53 (49%)
 Frame = +2

Query: 59   LGNTQDSTLQR*SPL*LFYVFSWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 217
            LG    +T+Q    + +    +W + +L +P ++  FW   + +ASS  +  +
Sbjct: 1065 LGGFASTTIQLCGIVAVMTNVTWQVFLLVVPVAVACFWMQKYYMASSRELVRI 1117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,031,097
Number of Sequences: 28952
Number of extensions: 291269
Number of successful extensions: 836
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)