Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J04
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   107   3e-24
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   107   3e-24
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual    28   2.0  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  107 bits (256), Expect = 3e-24
 Identities = 48/67 (71%), Positives = 56/67 (83%)
 Frame = +1

Query: 280 KQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRXHPFHVIRINKMLSCAGADRLQTGMRG 459
           +Q++SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR 
Sbjct: 58  EQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRH 117

Query: 460 CVWQASG 480
              + +G
Sbjct: 118 AFGKPNG 124



 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
 Frame = +2

Query: 461 AFGKPQGTVARVRIGPTIMSVRSSDRWKAQVIEALRRAXFKFPDVKDLRI-KEVGFHKV* 637
           AFGKP G VARV IG  +MSVR+ D  +A  IEALRR  +KFP  + + + K+ GF +  
Sbjct: 118 AFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYA 177

Query: 638 X**VXXLREXGRLANXGCIVXYRPEHGPL 724
                  R  G +   GC   +  + G L
Sbjct: 178 RDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 180 PESQXSVSSNLGKQRAXR*RTFHWCVHLVSDEYE 281
           P+S+  +  +LG++RA     F  C+HLVS+EYE
Sbjct: 27  PDSKIRIF-DLGRKRAGV-DEFPLCIHLVSNEYE 58


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  107 bits (256), Expect = 3e-24
 Identities = 48/67 (71%), Positives = 56/67 (83%)
 Frame = +1

Query: 280 KQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRXHPFHVIRINKMLSCAGADRLQTGMRG 459
           +Q++SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR 
Sbjct: 58  EQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRH 117

Query: 460 CVWQASG 480
              + +G
Sbjct: 118 AFGKPNG 124



 Score = 62.9 bits (146), Expect = 6e-11
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
 Frame = +2

Query: 461 AFGKPQGTVARVRIGPTIMSVRSSDRWKAQVIEALRRAXFKFPDVKDLRI-KEVGFHKV* 637
           AFGKP G VARV IG  +MSVR+ D  +A  IEALRR  +KFP  + + + K+ GF +  
Sbjct: 118 AFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYA 177

Query: 638 X**VXXLREXGRLANXGCIVXYRPEHGPL 724
                  R  G +   GC   +  + G L
Sbjct: 178 RDEYIEKRSRGEIIPDGCYAKFLNKRGSL 206



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 180 PESQXSVSSNLGKQRAXR*RTFHWCVHLVSDEYE 281
           P+S+  +  +LG++RA     F  C+HLVS+EYE
Sbjct: 27  PDSKIRIF-DLGRKRAGV-DEFPLCIHLVSNEYE 58


>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 661 TQXXNSSRSYFVKPHFFDT*IFDVRELELGTAQSLD 554
           T    S  +YF++PH     I DV EL +  AQ LD
Sbjct: 187 TSTLASEYAYFIRPHGTLYTITDVEELHVWMAQHLD 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,919,354
Number of Sequences: 5004
Number of extensions: 55699
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)