Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_J04
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 114 8e-26
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 111 5e-25
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 108 5e-24
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754... 29 4.9
06_02_0280 - 13708651-13708839,13708895-13709164,13709889-137104... 29 6.5
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 114 bits (275), Expect = 8e-26
Identities = 61/129 (47%), Positives = 75/129 (58%), Gaps = 1/129 (0%)
Frame = +1
Query: 106 RRLLXVLQKINRNPXKSKGSCRGCXLNPKXPYLRIWVSSXRXVDXLSTGACTWCPTNMKQ 285
RR ++I P CRG P +RI+ + C + K+
Sbjct: 3 RRPARCYRQIKNKPYPKSRYCRGVP----DPKIRIYDVGMKKKGVDEFPYCVHLVSWEKE 58
Query: 286 -LSSEALEAGRICCNKYLVKNCGKDQFHIRMRXHPFHVIRINKMLSCAGADRLQTGMRGC 462
+SSEALEA RI CNKY+ KN GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMRG
Sbjct: 59 NVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGA 118
Query: 463 VWQASGYCS 489
+ G C+
Sbjct: 119 FGKPQGTCA 127
Score = 61.7 bits (143), Expect = 7e-10
Identities = 39/93 (41%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 449 GCVGAFGKPQGTVARVRIGPTIMSVRSSDRWKAQVIEALRRAXFKFPD-VKDLRIKEVGF 625
G GAFGKPQGT ARV IG ++SVR + EALRRA FKFP K + ++ GF
Sbjct: 114 GMRGAFGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGF 173
Query: 626 HKV*X**VXXLREXGRLANXGCIVXYRPEHGPL 724
K L+ GR+ + G HG L
Sbjct: 174 TKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 111 bits (268), Expect = 5e-25
Identities = 59/122 (48%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Frame = +1
Query: 127 QKINRNPXKSKGSCRGCXLNPKXPYLRIWVSSXRXVDXLSTGACTWCPTNMKQ-LSSEAL 303
++I P CRG +PK + + + VD S C + K+ ++SEAL
Sbjct: 6 RQIKNKPYPKSRYCRGVP-DPKIRIYDVGMKK-KGVDEFSH--CVHLVSWEKENVTSEAL 61
Query: 304 EAGRICCNKYLVKNCGKDQFHIRMRXHPFHVIRINKMLSCAGADRLQTGMRGCVWQASGY 483
EA RI CNKY+ K+ GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMRG + G
Sbjct: 62 EAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGT 121
Query: 484 CS 489
C+
Sbjct: 122 CA 123
Score = 58.4 bits (135), Expect = 7e-09
Identities = 36/81 (44%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +2
Query: 449 GCVGAFGKPQGTVARVRIGPTIMSVRSSDRWKAQVIEALRRAXFKFPD-VKDLRIKEVGF 625
G GAFGKPQGT ARV IG ++SVR EALRRA FKFP K + ++ GF
Sbjct: 110 GMRGAFGKPQGTCARVDIGQVLLSVRCKPNNAVHASEALRRAKFKFPGRQKIIESRKWGF 169
Query: 626 HKV*X**VXXLREXGRLANXG 688
K L+ GR+ G
Sbjct: 170 TKFSRDEYVRLKSEGRIMPDG 190
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 108 bits (260), Expect = 5e-24
Identities = 57/122 (46%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Frame = +1
Query: 127 QKINRNPXKSKGSCRGCXLNPKXPYLRIWVSSXRXVDX-LSTGACTWCPTNMKQLSSEAL 303
++I P CRG +PK + D L +W N+ SSEAL
Sbjct: 317 RQIKNKPYPKSRYCRGVP-DPKIRIFDVGQKKRSADDFPLCVHLVSWEKENV---SSEAL 372
Query: 304 EAGRICCNKYLVKNCGKDQFHIRMRXHPFHVIRINKMLSCAGADRLQTGMRGCVWQASGY 483
EA RI CNKY+ K+ GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRG + +G
Sbjct: 373 EAARIACNKYMAKHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGT 432
Query: 484 CS 489
C+
Sbjct: 433 CA 434
Score = 62.1 bits (144), Expect = 6e-10
Identities = 41/107 (38%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +2
Query: 449 GCVGAFGKPQGTVARVRIGPTIMSVRSSDRWKAQVIEALRRAXFKFPDVKDLRIK-EVGF 625
G GAFGKP GT ARVRIG ++SVR D A EALRRA FKFP + + + GF
Sbjct: 421 GMRGAFGKPTGTCARVRIGQVLLSVRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGF 480
Query: 626 HKV*X**VXXLREXGRLANXGCIVXYRPEHGPLDAWXXGXG*XPQCI 766
+ L+ GR+ G HG + G G P +
Sbjct: 481 TRFKRDEYLKLKSEGRIVPDGVNAKLLTRHGSVADRQPGRGVFPPSV 527
>10_08_0259 +
16274430-16274747,16275180-16275242,16275329-16275424,
16275526-16275618,16276415-16276605,16276684-16276921,
16277805-16277900,16278324-16278404,16278532-16278939,
16279048-16279331,16279460-16279547,16279630-16279830,
16280032-16280118,16280119-16280238,16280536-16280708,
16281914-16282055,16282292-16282414,16282601-16282656,
16282735-16283038,16283154-16283283,16283491-16283549,
16283829-16284061,16285480-16285527,16285765-16285843,
16285925-16286169,16286338-16286722
Length = 1446
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 214 VSSXRXVDXLSTGACTWCPTNMKQLSSEALEAGRICCNKYLVKNCGKD 357
+ R D +S G CTWC +QL S + C L KN G++
Sbjct: 522 IEKNRLEDPVSGGYCTWC-VKSEQLQS-CSSCKLLFCRNCLSKNFGEE 567
>06_02_0280 -
13708651-13708839,13708895-13709164,13709889-13710476,
13710511-13710686,13710897-13711029,13711193-13711462,
13711521-13711889
Length = 664
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -3
Query: 523 HGHDGWSNANTCYSTLRLAKRTH--ASQSGAY 434
HG D W N CY+ L R H A+ GA+
Sbjct: 88 HGMDDWLNLQNCYNGLTPMSRDHLDATAGGAF 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,412,655
Number of Sequences: 37544
Number of extensions: 418386
Number of successful extensions: 943
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 915
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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