Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J04
         (876 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         69   5e-12
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         32   0.70 
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         30   2.8  
SB_50078| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_16206| Best HMM Match : Planc_extracel (HMM E-Value=10)             29   6.5  
SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 68.9 bits (161), Expect = 5e-12
 Identities = 33/44 (75%), Positives = 36/44 (81%)
 Frame = +2

Query: 458 GAFGKPQGTVARVRIGPTIMSVRSSDRWKAQVIEALRRAXFKFP 589
           GAFGKPQGTVARV IG TI+S+R+ D  KA  IEALRRA FKFP
Sbjct: 3   GAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFP 46


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 416  YRALELIGSRLGCVGAFGKPQGTVARVRIGPTIMSVRSSDRW 541
            YR L+ I +R+ C G +G P+GT      GP +    S  RW
Sbjct: 1947 YRNLKPITARMRCAGIYGTPKGTCKGDSGGPLV--CESKGRW 1986


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +1

Query: 301 LEAGRICCNKYLVKNCGKDQFHIRMRXHPFHVIRINKMLS 420
           L    I C  Y  KN  +D   +RM  HP H IRIN ++S
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS 151


>SB_50078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -3

Query: 295 LSSAVSYSSDTKCTHQWKVRQRXARCLPKFEDTXSWDSGXTPDK 164
           +++A + S+DT+C H+  V      CLP+ + T S +S  TP++
Sbjct: 350 VNTAGTASADTRCQHELAVADSPVVCLPE-QQTHSGESA-TPEQ 391


>SB_16206| Best HMM Match : Planc_extracel (HMM E-Value=10)
          Length = 219

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 316 YVLPPKPLSSAVSYSSDTKCTHQWKVRQRXARCLPK 209
           YVLP +P S+  S     KCT  + +R+R  + L K
Sbjct: 79  YVLPTRPQSNQSSIKPVDKCTSSYLLRRRPQKQLCK 114


>SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -3

Query: 295 LSSAVSYSSDTKCTHQWKVRQRXARCLPKFEDTXSWDSGXTPDKNPSI 152
           + +A + S+DT+C H+  V      CLP+   T S +S  TP++   +
Sbjct: 612 VDTAGTASADTRCQHELAVADSPVVCLPE-RQTHSGESA-TPEQTNQV 657


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,007,084
Number of Sequences: 59808
Number of extensions: 473036
Number of successful extensions: 1044
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)