Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J04
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   118   4e-27
Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z47809-2|CAA87780.1|  298|Caenorhabditis elegans Hypothetical pr...    29   5.8  
S50380-1|AAB24366.1|  161|Caenorhabditis elegans succinate-ubiqu...    29   5.8  
AB008569-1|BAA23717.1|  297|Caenorhabditis elegans iron-sulfur s...    29   5.8  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  118 bits (285), Expect = 4e-27
 Identities = 63/126 (50%), Positives = 76/126 (60%), Gaps = 1/126 (0%)
 Frame = +1

Query: 106 RRLLXVLQKINRNPXKSKGSCRGCXLNPKXPYLRIWVSSXRXVDXLSTGACTWCPTNMKQ 285
           RR     + I   P      CRG         +RI+    +  +  +  AC    +N ++
Sbjct: 3   RRPARCYRYIKNKPYPKSRFCRGVP----DAKIRIFDLGNKRANVDTFPACVHMMSNERE 58

Query: 286 -LSSEALEAGRICCNKYLVKNCGKDQFHIRMRXHPFHVIRINKMLSCAGADRLQTGMRGC 462
            LSSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRG 
Sbjct: 59  HLSSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGA 118

Query: 463 VWQASG 480
             +  G
Sbjct: 119 YGKPQG 124



 Score = 68.1 bits (159), Expect = 8e-12
 Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
 Frame = +2

Query: 380 FTLSTLSASIKCYRALELIGSRLGCVGAFGKPQGTVARVRIGPTIMSVRSSDRWKAQVIE 559
           F ++ ++  + C  A  L   + G  GA+GKPQG VARV IG  + S+R  +      IE
Sbjct: 94  FHVTRINKMLSCAGADRL---QTGMRGAYGKPQGLVARVDIGDILFSMRIKEGNVKHAIE 150

Query: 560 ALRRAXFKFPDVKDL-RIKEVGFHKV*X**VXXLREXGRLANXGCIVXYRPEHGPLDAW 733
           A RRA FKFP  + +   ++ GF K        +R  GRL + G  V  + EHGPL  W
Sbjct: 151 AFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTKW 209


>Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical
           protein M195.3 protein.
          Length = 687

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -3

Query: 364 GTDPFRSSLRGTYCSRYVLPPKPLSSAVSYSSDTKCTHQWKV 239
           G D     L GT  +RYVL  KPLS+  ++ + TK   +WK+
Sbjct: 440 GADVIEHGLAGTNVARYVL-EKPLSTR-TFQTVTKAITKWKM 479


>Z47809-2|CAA87780.1|  298|Caenorhabditis elegans Hypothetical
           protein F42A8.2 protein.
          Length = 298

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 522 CALVTGGRHRSSRLCAVPSSSSRTSKIY 605
           CA+  GG++  + +C + S +S+++KIY
Sbjct: 115 CAMNIGGQNTLACICKIDSDTSKSTKIY 142


>S50380-1|AAB24366.1|  161|Caenorhabditis elegans
           succinate-ubiquinone oxidoreductasecomplex II
           iron-sulfur subunit protein.
          Length = 161

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 522 CALVTGGRHRSSRLCAVPSSSSRTSKIY 605
           CA+  GG++  + +C + S +S+++KIY
Sbjct: 9   CAMNIGGQNTLACICKIDSDTSKSTKIY 36


>AB008569-1|BAA23717.1|  297|Caenorhabditis elegans iron-sulfur
           subunit of mitochondrialsuccinate dehydrogenase protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +3

Query: 522 CALVTGGRHRSSRLCAVPSSSSRTSKIY 605
           CA+  GG++  + +C + S +S+++KIY
Sbjct: 114 CAMNIGGQNTLACICKIDSDTSKSTKIY 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,496,880
Number of Sequences: 27780
Number of extensions: 332312
Number of successful extensions: 720
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)