Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J04
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   2.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   2.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   8.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 285 LFHIRRTPSARTSGKXVNVXXAA 217
           LFH R TP  R SG+ + +   A
Sbjct: 537 LFHHRDTPVVRASGRELTIILLA 559


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 285 LFHIRRTPSARTSGKXVNVXXAA 217
           LFH R TP  R SG+ + +   A
Sbjct: 627 LFHHRDTPVVRASGRELTIILLA 649


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 470 KPQGTVARVRIGPTIMSVRSSDRWKAQ 550
           KP+   ARV +G T +   S+   K+Q
Sbjct: 269 KPEAAPARVTLGVTSLLTLSTQHAKSQ 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,721
Number of Sequences: 438
Number of extensions: 4007
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)