Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_J04
(876 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 114 6e-26
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 114 6e-26
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 114 6e-26
At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase, p... 31 0.76
At3g23540.1 68416.m02962 expressed protein ; expression supporte... 30 1.8
At1g18250.1 68414.m02276 thaumatin, putative identical to SP|P50... 29 3.1
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 4.1
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 7.1
At1g19320.1 68414.m02402 pathogenesis-related thaumatin family p... 28 9.4
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 114 bits (275), Expect = 6e-26
Identities = 62/129 (48%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Frame = +1
Query: 106 RRLLXVLQKINRNPXKSKGSCRGCXLNPKXPYLRIWVSSXRXVDXLSTGACTWCPTNMKQ 285
RR ++I P CRG P +RI+ + C + K+
Sbjct: 3 RRPARCYRQIKGKPYPKSRYCRGVP----DPKIRIYDVGMKRKGVDEFPFCVHLVSWEKE 58
Query: 286 -LSSEALEAGRICCNKYLVKNCGKDQFHIRMRXHPFHVIRINKMLSCAGADRLQTGMRGC 462
+SSEALEA RI CNKY+VK+ GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMRG
Sbjct: 59 NVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGA 118
Query: 463 VWQASGYCS 489
+A G C+
Sbjct: 119 FGKALGTCA 127
Score = 61.3 bits (142), Expect = 8e-10
Identities = 38/93 (40%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +2
Query: 449 GCVGAFGKPQGTVARVRIGPTIMSVRSSDRWKAQVIEALRRAXFKFPDVKDLRI-KEVGF 625
G GAFGK GT ARV IG ++SVR D EALRRA FKFP + + + ++ GF
Sbjct: 114 GMRGAFGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGF 173
Query: 626 HKV*X**VXXLREXGRLANXGCIVXYRPEHGPL 724
K LR R+ G + HGPL
Sbjct: 174 TKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPL 206
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 114 bits (275), Expect = 6e-26
Identities = 62/129 (48%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Frame = +1
Query: 106 RRLLXVLQKINRNPXKSKGSCRGCXLNPKXPYLRIWVSSXRXVDXLSTGACTWCPTNMKQ 285
RR ++I P CRG P +RI+ + C + K+
Sbjct: 3 RRPARCYRQIKGKPYPKSRYCRGVP----DPKIRIYDVGMKRKGVDEFPYCVHLVSWEKE 58
Query: 286 -LSSEALEAGRICCNKYLVKNCGKDQFHIRMRXHPFHVIRINKMLSCAGADRLQTGMRGC 462
+SSEALEA RI CNKY+VK+ GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMRG
Sbjct: 59 NVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGA 118
Query: 463 VWQASGYCS 489
+A G C+
Sbjct: 119 FGKALGTCA 127
Score = 59.7 bits (138), Expect = 3e-09
Identities = 38/93 (40%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 449 GCVGAFGKPQGTVARVRIGPTIMSVRSSDRWKAQVIEALRRAXFKFPDVKDLRI-KEVGF 625
G GAFGK GT ARV IG ++SVR D EALRRA FKFP + + + ++ GF
Sbjct: 114 GMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGF 173
Query: 626 HKV*X**VXXLREXGRLANXGCIVXYRPEHGPL 724
K LR+ R+ G + HGPL
Sbjct: 174 TKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPL 206
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 114 bits (275), Expect = 6e-26
Identities = 62/129 (48%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Frame = +1
Query: 106 RRLLXVLQKINRNPXKSKGSCRGCXLNPKXPYLRIWVSSXRXVDXLSTGACTWCPTNMKQ 285
RR ++I P CRG P +RI+ + C + K+
Sbjct: 3 RRPARCYRQIKGKPYPKSRYCRGVP----DPKIRIYDVGMKRKGVDEFPFCVHLVSWEKE 58
Query: 286 -LSSEALEAGRICCNKYLVKNCGKDQFHIRMRXHPFHVIRINKMLSCAGADRLQTGMRGC 462
+SSEALEA RI CNKY+VK+ GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMRG
Sbjct: 59 NVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGA 118
Query: 463 VWQASGYCS 489
+A G C+
Sbjct: 119 FGKALGTCA 127
Score = 59.3 bits (137), Expect = 3e-09
Identities = 38/93 (40%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 449 GCVGAFGKPQGTVARVRIGPTIMSVRSSDRWKAQVIEALRRAXFKFPDVKDLRI-KEVGF 625
G GAFGK GT ARV IG ++SVR D EALRRA FKFP + + + ++ GF
Sbjct: 114 GMRGAFGKALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGF 173
Query: 626 HKV*X**VXXLREXGRLANXGCIVXYRPEHGPL 724
K LR+ R+ G + HGPL
Sbjct: 174 TKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPL 206
>At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase,
putative similar to laccase [Liriodendron
tulipifera][GI:1621467]
Length = 573
Score = 31.5 bits (68), Expect = 0.76
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 246 GKXVNVXXAAYPNSKIRXLGIQGTPPTRTLRFXGITVYFLQYR 118
GK NV +P + I GTPP T+ G V L+Y+
Sbjct: 414 GKSKNVFMTDFPTAPIIPFNYTGTPPNNTMVSRGTKVVVLKYK 456
>At3g23540.1 68416.m02962 expressed protein ; expression supported
by MPSS
Length = 568
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -3
Query: 592 VRELELGTAQSLDDLCLPPVTRAHGHDGWSNANTCYSTLRLAKRTHASQS 443
+++LE+ + Q + PP TR HG + NA C S+ + T A+QS
Sbjct: 433 LKDLEVQSQQKKE----PPETRIHGGSAFLNAVQCISSREESTSTRANQS 478
>At1g18250.1 68414.m02276 thaumatin, putative identical to SP|P50699
Thaumatin-like protein precursor {Arabidopsis thaliana};
strong similarity to pathogenesis-related group 5
protein GI:2749943 from [Brassica rapa]
Length = 243
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 437 GSRLGCVGAFGKPQGTVARVRIGPTI 514
G L C GA G+P T+A + +GP +
Sbjct: 93 GGSLSCNGAGGEPPATLAEITLGPEL 118
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 292 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRXHPFHVIRINKMLSC 423
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 316 ICCNKYLVKNCGKDQFHIRMRXHPFHVIRI 405
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At1g19320.1 68414.m02402 pathogenesis-related thaumatin family
protein similar to SP:P28493 Pathogenesis-related
protein 5 precursor (PR-5) from [Arabidopsis thaliana],
thaumatin-like protein [Arabidopsis thaliana]
GI:2435406; contains Pfam profile PF00314: Thaumatin
family
Length = 247
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 437 GSRLGCVGAFGKPQGTVARVRIG 505
GS+L C GA G P T+A IG
Sbjct: 97 GSKLKCAGAGGAPPATLAEFTIG 119
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,725,249
Number of Sequences: 28952
Number of extensions: 310388
Number of successful extensions: 714
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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