Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J03
         (848 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)             126   2e-29
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)             108   5e-24
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  99   2e-21
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   87   1e-17
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               65   8e-11
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      56   5e-08
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              53   3e-07
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            46   3e-05
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                40   0.003
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              29   3.6  
SB_7491| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.3  
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score =  126 bits (304), Expect = 2e-29
 Identities = 60/92 (65%), Positives = 73/92 (79%)
 Frame = +3

Query: 300 MTNDGNAILRXITVQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAIAEPFLTQNIH 479
           MTNDGNAILR I V+HPAAKSMIEI+RTQDEEVGDGTTSVI+LAGE +++AEPFL Q +H
Sbjct: 1   MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60

Query: 480 PTVIIREYRQALEDAIVLLQDKISVPVDLNDR 575
           PT II  YR A++D I +L+ +I   +    R
Sbjct: 61  PTQIIAAYRLAMDDMIDILKQQIREELQYRSR 92


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score =  108 bits (260), Expect = 5e-24
 Identities = 52/88 (59%), Positives = 65/88 (73%)
 Frame = +3

Query: 312 GNAILRXITVQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAIAEPFLTQNIHPTVI 491
           GN     I V+HPAAKSMIEI+RTQDEEVGDGTTSVI+LAGE +++AEPFL Q +HPT I
Sbjct: 202 GNVQAAKIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQI 261

Query: 492 IREYRQALEDAIVLLQDKISVPVDLNDR 575
           I  YR A++D I +L+ +I   +    R
Sbjct: 262 IAAYRLAMDDMIDILKQQIREELQYRSR 289


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score =   99 bits (238), Expect = 2e-21
 Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 2/131 (1%)
 Frame = +3

Query: 243 ALGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPAAKSMIEIARTQDEEVGDGTTSVI 422
           +LGP+ M KM++ P G + +TNDG  IL  + V H  AK M+E++++QD E+GDGTT V+
Sbjct: 49  SLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVELSKSQDNEIGDGTTGVV 108

Query: 423 VLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKI--SVPVDLNDRDKMKEVI 596
           VLAG +L  AE  L   IHP  I   Y  A + A+  + D I  + PVD ++++ + +  
Sbjct: 109 VLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHM-DSIADNFPVDKDNKESLIQTA 167

Query: 597 RSCVGTKYIGR 629
            + +G+K + R
Sbjct: 168 MTTLGSKIVSR 178


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 3/126 (2%)
 Frame = +3

Query: 246 LGPQAMLKMLMD--PMGGIVMTNDGNAILRXITVQHPAAKSMIEIARTQDEEVGDGTTSV 419
           LGP+ M K+L      G I +TNDG  IL+ I + +PAAK ++E+++ QD+EVGDGTTSV
Sbjct: 40  LGPKGMDKILQSFGQNGNIQVTNDGATILKSIGIDNPAAKILVELSKVQDDEVGDGTTSV 99

Query: 420 IVLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKISVPVD-LNDRDKMKEVI 596
            VL  E+L  AE  ++  IHP  I+  +R++++ A   L+   +  VD  +D +K +E +
Sbjct: 100 TVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALE---AAAVDHSSDPEKFREDL 156

Query: 597 RSCVGT 614
            +   T
Sbjct: 157 MNIART 162


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 64.9 bits (151), Expect = 8e-11
 Identities = 32/101 (31%), Positives = 61/101 (60%)
 Frame = +3

Query: 339 VQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAIAEPFLTQNIHPTVIIREYRQALE 518
           +QHP A  +  +A  QD+  GDGTTS +++ GE+L  A+ ++++ +HP ++   +  A +
Sbjct: 171 IQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKK 230

Query: 519 DAIVLLQDKISVPVDLNDRDKMKEVIRSCVGTKYIGRWADL 641
            A+ +L++ + V  ++ DRD +  V ++ + TK     ADL
Sbjct: 231 KALEVLEE-VKVSREM-DRDTLINVAKTSLRTKVRTELADL 269


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
 Frame = +3

Query: 372 IARTQDEEVGDGTTSVIVLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQ---- 539
           +++ QD+EVGDGTTSV VLA E+L  AE  ++  IHP  I+  +R++++ A   L+    
Sbjct: 2   LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAV 61

Query: 540 DKISVPVDLNDRDKMKEVIRSCVGTKYIGRWAD 638
           D  S P     RD +  + R+ + +K + +  D
Sbjct: 62  DHSSDPEKF--RDDLMNIARTTLSSKILVQHRD 92


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 21/50 (42%), Positives = 36/50 (72%)
 Frame = +3

Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPAAKSMIEIARTQDEE 395
           LGP+ M K+++D  G   ++NDG  I+  + + HPAAK++++IA++QD E
Sbjct: 675 LGPRGMDKLIVDGRGKATISNDGATIINLLDIVHPAAKTLVDIAKSQDAE 724


>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/39 (51%), Positives = 29/39 (74%)
 Frame = +3

Query: 432 GEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKI 548
           GE +++AEPFL Q +HPT II  YR A++D I +L+ +I
Sbjct: 2   GEFMSVAEPFLEQQMHPTQIIAAYRLAMDDMIDILKQQI 40


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 23/149 (15%)
 Frame = +3

Query: 243 ALGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPAAKSMIEIARTQDEEVGDGTTSVI 422
           + GP  +  ML    G I++TN G+ IL  +T+ +P  + ++E AR+     G G +  I
Sbjct: 19  SFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEAARSLSGRTGSGASYFI 78

Query: 423 VLAGEML-AIA-------EPFLTQNIHPTVI-IREYRQA--------LEDAIVLLQDKIS 551
           ++  E+   IA       E  L +    T I +  + QA         +D  +   D + 
Sbjct: 79  IILAEIFREIANITGITKEKTLKELSAKTQIELFSFAQAFNKIESERFDDLFLRAFDNLE 138

Query: 552 VPVDLND------RDKMKEVIRSCVGTKY 620
           V VDL++      R K+K VI +C+  K+
Sbjct: 139 VRVDLSEDNCELVRKKLKAVINTCLNGKF 167


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = +3

Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXITV----QHPAAKSMIEIARTQDEEVGDGTT 413
           LGP+    ++    GG  +T DG  + + I +    Q+  A+ + ++A   +EE GDGTT
Sbjct: 87  LGPKGKNVIIEQSFGGPKITKDGVTVAKAIELKDKYQNIGARLVQDVANNTNEEAGDGTT 146

Query: 414 SVIVLA 431
           +  VLA
Sbjct: 147 TATVLA 152


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = +3

Query: 243 ALGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQ---HPAAKSMIEIARTQDEEVGDGTT 413
           +LGP+ M KM+    G + +TNDG  I    TV     P  K ++  A       G+   
Sbjct: 43  SLGPKGMDKMIQGGNGDVTITNDGATIKLIDTVDLEGGPVGKPVVPAALMNRPTRGERRF 102

Query: 414 SVIVLAGEMLA 446
           +   LA  +LA
Sbjct: 103 AYWALAECILA 113


>SB_7491| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = -2

Query: 457 GSAIANIS---PASTMTDVVPSPTSSSWVLAISIIDFAAGCWTVIXLSIALPSL 305
           G + ANIS   P+ T+     S  + SW LAI+ I   A  WT+   +I+  +L
Sbjct: 34  GCSHANISIDAPSRTLAIANISIDAPSWTLAITNISIDAPSWTLAIANISKDAL 87


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +3

Query: 378 RTQDEEVGDGTTSVIVLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKIS 551
           R Q+  + D  +++ VL+ +   + +  +   IH T I +E R A+ED  V+ Q  IS
Sbjct: 787 RLQELALNDEVSNMDVLSQKQETM-KCHIQDKIHMTFIFKELRAAIEDNRVVYQQLIS 843


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,178,352
Number of Sequences: 59808
Number of extensions: 449865
Number of successful extensions: 1633
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)