Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_J03
(848 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 186 2e-47
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 106 1e-24
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 109 2e-24
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 103 1e-22
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 94 9e-20
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 94 1e-19
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 93 2e-19
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 81 7e-16
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 81 7e-16
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 63 3e-10
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 43 2e-04
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 43 2e-04
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 42 5e-04
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 41 0.001
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 41 0.001
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 40 0.002
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 37 0.015
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 33 0.32
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 30 2.2
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 29 3.0
At2g25660.1 68415.m03075 expressed protein 28 9.0
At2g02220.1 68415.m00159 leucine-rich repeat transmembrane prote... 28 9.0
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 186 bits (453), Expect = 2e-47
Identities = 105/189 (55%), Positives = 133/189 (70%), Gaps = 4/189 (2%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPAAKSMIEIARTQDEEVGDGTTSVIV 425
LGP++MLKML+D GGIV+TNDGNAILR + V HPAAKSMIE++RTQDEEVGDGTTSVIV
Sbjct: 39 LGPRSMLKMLLDAGGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIV 98
Query: 426 LAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKISVPVDLNDRDKMKEVIRSC 605
LAGEML +AE FL +N HPTVI R Y +ALED+I +L DKI++ +D+NDR ++ +++SC
Sbjct: 99 LAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSIAVL-DKIAMSIDINDRSQVLGLVKSC 157
Query: 606 VGTKYIGRW----ADLXRRHCS*CG*YCYCE**WQN*G*H*KLCKSGXDPGGTVEESRVL 773
+GTK+ ++ ADL + G + K K PGG E+S VL
Sbjct: 158 IGTKFTSQFGDLIADLAIDATTTVGVDLGQGLREVDIK---KYIKVEKVPGGQFEDSEVL 214
Query: 774 SGVMFNKDV 800
GVMFNKDV
Sbjct: 215 KGVMFNKDV 223
Score = 35.5 bits (78), Expect = 0.045
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 619 TSVVGQILXVDIALDAVNTVTVN-DNGRIEVDIKNYAKVEXIQVAQLK 759
TS G ++ D+A+DA TV V+ G EVDIK Y KVE + Q +
Sbjct: 163 TSQFGDLI-ADLAIDATTTVGVDLGQGLREVDIKKYIKVEKVPGGQFE 209
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 106 bits (255), Expect(2) = 1e-24
Identities = 52/133 (39%), Positives = 84/133 (63%)
Frame = +3
Query: 243 ALGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPAAKSMIEIARTQDEEVGDGTTSVI 422
+LGP+ M KM+ G +++TNDG IL + V PAAK ++E++++QD GDGTT+V+
Sbjct: 47 SLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVV 106
Query: 423 VLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKISVPVDLNDRDKMKEVIRS 602
V+AG +L + LT IHPTVI +A AI +L ++VPV+L DRD + + +
Sbjct: 107 VIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDIL-TAMAVPVELTDRDSLVKSAST 165
Query: 603 CVGTKYIGRWADL 641
+ +K + +++ L
Sbjct: 166 SLNSKVVSQYSTL 178
Score = 24.2 bits (50), Expect(2) = 1e-24
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +3
Query: 744 GGTVEESRVLSGVMFNKDV 800
GGTV+++ + G++F+K V
Sbjct: 211 GGTVDDTHTVKGLVFDKKV 229
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 109 bits (262), Expect = 2e-24
Identities = 52/132 (39%), Positives = 83/132 (62%)
Frame = +3
Query: 243 ALGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPAAKSMIEIARTQDEEVGDGTTSVI 422
+LGP + KML+D +G + +TNDG ILR + V+HPAAK ++E+A QD EVGDGTTSV+
Sbjct: 38 SLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVV 97
Query: 423 VLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKISVPVDLNDRDKMKEVIRS 602
++A E+L A + IHPT II YR A+ ++ +++K+ V+ + + ++
Sbjct: 98 IVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKVEKLGKVPLINCAKT 157
Query: 603 CVGTKYIGRWAD 638
+ +K I +D
Sbjct: 158 SMSSKLISGDSD 169
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 103 bits (248), Expect = 1e-22
Identities = 47/123 (38%), Positives = 80/123 (65%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPAAKSMIEIARTQDEEVGDGTTSVIV 425
LGP+ M K++ D G + ++NDG I++ + + HPAAK +++IA++QD EVGDGTT+V++
Sbjct: 43 LGPRGMDKLIHDDKGSVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVL 102
Query: 426 LAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKISVPVDLNDRDKMKEVIRSC 605
LA E L A+PF+ +H +IR YR A AI +++ ++V ++ ++ K ++ C
Sbjct: 103 LAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAIAKVKE-LAVSIEGKSVEEKKGLLAKC 161
Query: 606 VGT 614
T
Sbjct: 162 AAT 164
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 94.3 bits (224), Expect = 9e-20
Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGG--IVMTNDGNAILRXITVQHPAAKSMIEIARTQDEEVGDGTTSV 419
LGP+ M K+L G + +TNDG IL+ + + +PAAK +++I++ QD+EVGDGTTSV
Sbjct: 38 LGPKGMDKILQSTGRGHAVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSV 97
Query: 420 IVLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDA 524
+VLAGE+L AE + IHP II YR A E A
Sbjct: 98 VVLAGELLREAEKLVASKIHPMTIIAGYRMASECA 132
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 93.9 bits (223), Expect = 1e-19
Identities = 45/132 (34%), Positives = 79/132 (59%), Gaps = 3/132 (2%)
Frame = +3
Query: 243 ALGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPAAKSMIEIARTQDEEVGDGTTSVI 422
+LGP M KM+++ + + +TND I+ + +QHPAAK ++ A+ Q EE+GDG I
Sbjct: 46 SLGPNGMNKMVINHLDKLFVTNDAATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTI 105
Query: 423 VLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKI---SVPVDLNDRDKMKEV 593
AGE+L AE + +HP+ II Y +A+ A+ +L+ + S +D+ ++D++
Sbjct: 106 SFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAVEILEQLVETGSETMDVRNKDEVISR 165
Query: 594 IRSCVGTKYIGR 629
+R+ V +K G+
Sbjct: 166 MRAAVASKQFGQ 177
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 93.1 bits (221), Expect = 2e-19
Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 1/130 (0%)
Frame = +3
Query: 243 ALGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPAAKSMIEIARTQDEEVGDGTTSVI 422
+LGP+ M KML P G I +TNDG IL + V + AK M+E++R+QD E+GDGTT V+
Sbjct: 47 SLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVV 106
Query: 423 VLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQD-KISVPVDLNDRDKMKEVIR 599
V+AG +L AE L + IHP I Y A A+ L+ D+N+ + + +
Sbjct: 107 VMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTCM 166
Query: 600 SCVGTKYIGR 629
+ + +K + R
Sbjct: 167 TTLSSKIVNR 176
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 170 RXSGRKVXLENXSAGKPIADVIXTCLGTSGHVKNVNGPYG 289
R G N +AGK +A ++ + LG G K + GP G
Sbjct: 23 RLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDG 62
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 81.4 bits (192), Expect = 7e-16
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPAAKSMIEIARTQDEEVGDGTTSVIV 425
LGP+ +KML+ G I +T DGN +L+ + +Q+P A + A QD+ GDGTTS ++
Sbjct: 37 LGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVI 96
Query: 426 LAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKISVPV---DLNDRDKMKEVI 596
GE++ +E + + +HP V++ + A + L D PV D D++ +K V
Sbjct: 97 FIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFL-DNFKTPVVMGDEVDKEILKMVA 155
Query: 597 RSCVGTKYIGRWAD 638
R+ + TK AD
Sbjct: 156 RTTLRTKLYEGLAD 169
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 81.4 bits (192), Expect = 7e-16
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPAAKSMIEIARTQDEEVGDGTTSVIV 425
LGP+ +KML+ G I +T DGN +L+ + +Q+P A + A QD+ GDGTTS ++
Sbjct: 37 LGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVI 96
Query: 426 LAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKISVPV---DLNDRDKMKEVI 596
GE++ +E + + +HP V++ + A + L D PV D D++ +K V
Sbjct: 97 FIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFL-DTFKTPVVMGDEPDKEILKMVA 155
Query: 597 RSCVGTKYIGRWAD 638
R+ + TK AD
Sbjct: 156 RTTLRTKLYEGLAD 169
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 62.9 bits (146), Expect = 3e-10
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = +3
Query: 339 VQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAIAEPFLTQNIHPTVIIREYRQALE 518
V + AK M+E++R+QD E+GDGTT V+V+AG +L AE L + IHP I Y A
Sbjct: 3 VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASR 62
Query: 519 DAIVLLQD-KISVPVDLNDRDKMKEVIRSCVGTKYIGR 629
A+ L+ D+N+ + + + + + +K + R
Sbjct: 63 VAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNR 100
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXI----TVQHPAAKSMIEIARTQDEEVGDGTT 413
LGP+ +L + I + NDG I + I T+++ A + E+A +E GDGTT
Sbjct: 63 LGPRGRNVVLAEK-DTIKVINDGVTIAKSIELPDTIENAGATLIQEVAIKMNESAGDGTT 121
Query: 414 SVIVLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKISVPV 560
+ I+LA EM+ + + + + +++ + +LQ K S+PV
Sbjct: 122 TAIILAREMIKAGSLAIAFGANAVSVKNGMNKTVKELVRVLQMK-SIPV 169
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 43.2 bits (97), Expect = 2e-04
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXI----TVQHPAAKSMIEIARTQDEEVGDGTT 413
LGP+ +++D G + NDG I R I +++ A + E+A ++ GDGTT
Sbjct: 76 LGPRGR-NVVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTT 134
Query: 414 SVIVLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKISVPVDLNDRDKMKEV 593
+ +LA E++ +T +P + R + ++ I LQ K + PV RD ++ V
Sbjct: 135 TASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKK-ARPV--KGRDDIRAV 191
Query: 594 IRSCVG 611
G
Sbjct: 192 ASISAG 197
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 41.9 bits (94), Expect = 5e-04
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPA----AKSMIEIARTQDEEVGDGTT 413
LGP+ +L G + NDG + R + ++ P AK + + A ++ GDGTT
Sbjct: 82 LGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTNDLAGDGTT 141
Query: 414 SVIVLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKISVPVD 563
+ +VLA ++A + +P +I R + + A+V K+S V+
Sbjct: 142 TSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTK-ALVAELKKMSKEVE 190
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 41.1 bits (92), Expect = 0.001
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPA----AKSMIEIARTQDEEVGDGTT 413
LGP+ +L G + NDG + R + ++ P AK + + A ++ GDGTT
Sbjct: 86 LGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTT 145
Query: 414 SVIVLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKISVPVD 563
+ +VLA +A + +P +I R + + A+V K+S V+
Sbjct: 146 TSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK-ALVTELKKMSKEVE 194
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 41.1 bits (92), Expect = 0.001
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPA----AKSMIEIARTQDEEVGDGTT 413
LGP+ +L G + NDG + R + ++ P AK + + A ++ GDGTT
Sbjct: 86 LGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTT 145
Query: 414 SVIVLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDKISVPVD 563
+ +VLA +A + +P +I R + + A+V K+S V+
Sbjct: 146 TSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAK-ALVTELKKMSKEVE 194
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPA----AKSMIEIARTQDEEVGDGTT 413
LGP+ +L G + NDG + R + ++ P AK + + A ++ GDGTT
Sbjct: 82 LGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTT 141
Query: 414 SVIVLAGEMLAIAEPFLTQNIHPTVIIR 497
+ +VLA +A + +P +I R
Sbjct: 142 TSVVLAQGFIAEGVKVVAAGANPVLITR 169
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 37.1 bits (82), Expect = 0.015
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPAAKSMIEIAR----TQDEEVGDGTT 413
LGP+ +L + G + NDG +L+ I ++ P +++ R ++ GDG+T
Sbjct: 70 LGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGST 129
Query: 414 SVIVLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVL 533
+ I+LA ++ ++ +P + R + + A+VL
Sbjct: 130 TSIILAHGLITEGIKVISAGTNPIQVARGIEKTTK-ALVL 168
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 32.7 bits (71), Expect = 0.32
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXITVQHPA----AKSMIEIARTQDEEVGDGTT 413
+GP+ ++ GG +T DG + + I+ Q A A+ + ++A ++ GDGTT
Sbjct: 61 MGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKNIGAELVKQVASATNKVAGDGTT 120
Query: 414 SVIVLAGEML 443
VL +L
Sbjct: 121 CATVLTQAIL 130
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXIT----VQHPAAKSMIEIARTQDEEVGDGTT 413
+GP+ ++ G +T DG + + I +++ A + ++A ++ GDGTT
Sbjct: 61 MGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAGDGTT 120
Query: 414 SVIVLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDK 545
VL + A + ++ + R A++ + L+ K
Sbjct: 121 CATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSK 164
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Frame = +3
Query: 246 LGPQAMLKMLMDPMGGIVMTNDGNAILRXIT----VQHPAAKSMIEIARTQDEEVGDGTT 413
+GP+ ++ G +T DG + + I +++ A + ++A ++ GDGTT
Sbjct: 62 MGPKGRNVIIEQSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVKQVANATNDVAGDGTT 121
Query: 414 SVIVLAGEMLAIAEPFLTQNIHPTVIIREYRQALEDAIVLLQDK 545
VL + + ++ + R + A++ + LQ +
Sbjct: 122 CATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVDTVVTNLQSR 165
>At2g25660.1 68415.m03075 expressed protein
Length = 2146
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 341 PTSSCKIYDRNRKDPR*RGWRWNHISHSASRRNVGDCRTLLDTEYSS 481
P S K + K PR ++WN SH S N+ + +L+ S+
Sbjct: 344 PGSGLKFLSKMLKVPRKYKFKWNSKSHKNSMSNISAKKRILERSASA 390
>At2g02220.1 68415.m00159 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1008
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 437 NVGDCRTLLDTEYSSNSHHQRIPPSFRGCHS 529
N+ DC+ L + + N+ H ++P SF+ S
Sbjct: 335 NLPDCKRLKNVNLARNTFHGQVPESFKNFES 365
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,133,992
Number of Sequences: 28952
Number of extensions: 309000
Number of successful extensions: 788
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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