Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J02
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    32   0.12 
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    31   0.29 
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    29   0.87 
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    28   2.0  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.5  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   4.7  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      26   6.1  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   6.1  

>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 13/59 (22%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 279 SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNFR--THHGRKLCQDHLQK 449
           +II   V+N I+D+  +  ++C ++W G   + +R ++   ++  +H   K    H+++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFYSNLYKKLSHRDAKSIYHHVRR 305


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 596 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 688
           +++ YN+   M T++C+C+S  +  YGGN A
Sbjct: 47  YSSTYNEITNMDTSSCSCSSTPK-SYGGNLA 76


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 596 HNTKYNQYLKMSTTTCNCNSRDRVVYGGNSA 688
           HN  +N + + S T+ +  SR+ V+  GNS+
Sbjct: 617 HNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 126 LCMLAASAGVV--ELSADTSNQALEEXLYNSILTGXYDSAVRQSLEYEXQGKGSII 287
           L ++ A+AG+    LS +  N+ +   +    L G Y +A      ++ QGKGS+I
Sbjct: 89  LDVMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 656 RDRVVYGGNSADSTXEQWFFXXAKYXNXVLFFIYN 760
           R R+V G ++A  + + W F   +Y   ++F+++N
Sbjct: 162 RQRIVVGKHAAHFSLDHWIF-VVEYYAPIVFYVFN 195


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
 Frame = -1

Query: 395 WEVLSNNFLS--VADPQL---VAVLHGVPSLVNDQVVNYILD 285
           W+VL +++L+  ++ P     V  LHGV + VN  V +YI D
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYIKD 229


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +1

Query: 136 SPPARA--SLNXPRTLLTKPSRXNCTTASSPAXTTVLSVRAWNMXAK---ARAP 282
           SPP  +  S N P    TKPS    +T S  A TT  S  ++++  K   AR+P
Sbjct: 463 SPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATSFSIINKEKPARSP 516


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +3

Query: 279 SIIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNFRTHH--GRKLCQDHLQKL 452
           +I +N +NN  ++ R+    + Y   VG+G          NFR +H  G +L   H  + 
Sbjct: 38  TIPKNYLNNSTVENRKYKTMFGYVTRVGDGD---------NFRFYHTPGGRLLGWHWLRK 88

Query: 453 QPRSEARFHNQSLEMR 500
            P S +   N+++ +R
Sbjct: 89  VPCSRSDLSNETISVR 104


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 282 IIQNVVNNLIIDKRRNTMEYCYKLWVGNGQEIVR 383
           +++++  NL I    N +EY   LW  NG  I +
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,078
Number of Sequences: 5004
Number of extensions: 44613
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)