Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J02
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical ...    29   5.8  
AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical ...    29   5.8  
AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical ...    28   7.7  
AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical ...    28   7.7  

>AL117193-4|CAB54984.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.5 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 127 CACSPPARASLNXPRTLLTKPSRXNCTTASSPAXTTVLS 243
           C C+P  + S +  RT  T+P + +C+  ++    T  S
Sbjct: 29  CGCAPKVQPSCSCQRTTYTQPQQYSCSCQNTAPVQTSCS 67


>AL117193-3|CAB54983.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.4 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 127 CACSPPARASLNXPRTLLTKPSRXNCTTASSPAXTTVLS 243
           C C+P  + S +  RT  T+P + +C+  ++    T  S
Sbjct: 29  CGCAPKVQPSCSCQRTTYTQPQQYSCSCQNTAPVQTSCS 67


>AL117193-5|CAB54985.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.6 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 127 CACSPPARASLNXPRTLLTKPSRXNCTTASSPAXTTVLS 243
           C C+P  + S +  RT  T+P + +C+  ++    T  S
Sbjct: 29  CGCAPKIQPSCSCQRTTYTQPQQYSCSCQNTAPVQTSCS 67


>AL117193-2|CAB54982.1|  335|Caenorhabditis elegans Hypothetical
           protein Y105C5A.3 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 127 CACSPPARASLNXPRTLLTKPSRXNCTTASSPAXTTVLS 243
           C C+P  + S +  RT  T+P + +C+  ++    T  S
Sbjct: 29  CGCAPKIQPSCSCQRTTYTQPQQYSCSCQNTAPVQTSCS 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,764,448
Number of Sequences: 27780
Number of extensions: 262906
Number of successful extensions: 778
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)