Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_J01
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    34   0.024
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    34   0.032
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    28   1.6  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    28   2.1  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 22/54 (40%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +1

Query: 409 GGXXXGEXKKGGXXGXGGGGGFFFXXXGG-GGGGXFFXXKKKXKGGXXGGFXXG 567
           GG        GG  G GGG G F    GG GGG   F       GG  GGF  G
Sbjct: 211 GGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264



 Score = 32.7 bits (71), Expect = 0.073
 Identities = 20/53 (37%), Positives = 20/53 (37%)
 Frame = +1

Query: 409 GGXXXGEXKKGGXXGXGGGGGFFFXXXGGGGGGXFFXXKKKXKGGXXGGFXXG 567
           GG   G    GG  G GG G       G GGG   F       GG  GGF  G
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG 250


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 33.9 bits (74), Expect = 0.032
 Identities = 23/61 (37%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = +1

Query: 400 KKXGGXXXGEXKKGGXXGXGGG-----GGFFFXXXGGGGGGXFFXXKKKXKGGXXGGFXX 564
           KK  G   G   +GG  G  GG     GGF     GG GGG         +GG  GGF  
Sbjct: 125 KKPKGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRG 184

Query: 565 G 567
           G
Sbjct: 185 G 185



 Score = 32.7 bits (71), Expect = 0.073
 Identities = 18/50 (36%), Positives = 20/50 (40%)
 Frame = +1

Query: 409 GGXXXGEXKKGGXXGXGGGGGFFFXXXGGGGGGXFFXXKKKXKGGXXGGF 558
           GG   G     G  G    GGF     GG GGG     +   +GG  GGF
Sbjct: 141 GGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGF 190


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +1

Query: 424 GEXKKGGXXGXGGGGGFFFXXXGGGGGGXFFXXKKKXKGGXXGG 555
           G   +GG  G GG GGF       GG G F   + + +GG   G
Sbjct: 446 GGGSRGGRGGFGGRGGF-------GGRGGFGGGRGRGRGGARSG 482



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/32 (43%), Positives = 14/32 (43%)
 Frame = +1

Query: 409 GGXXXGEXKKGGXXGXGGGGGFFFXXXGGGGG 504
           GG   G    GG  G GG GGF      G GG
Sbjct: 447 GGSRGGRGGFGGRGGFGGRGGFGGGRGRGRGG 478


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +1

Query: 436 KGGXXGXGGGGGFFFXXXGGGGGGXFFXXKKKXKGGXXGG 555
           +GG  G  GG G F    GG GGG     +   +GG  GG
Sbjct: 8   RGGRGGSRGGRGGFNGGRGGFGGGR-GGARGGGRGGARGG 46



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +1

Query: 409 GGXXXGEXKKGGXXGXGGG-GGFFFXXXGGGGGGXFFXXKKKXKGGXXGG 555
           GG       +GG  G  GG GG      GGG GG      +  +GG  GG
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGA--RGGRGGRGGARGG 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.151    0.484 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 892,382
Number of Sequences: 5004
Number of extensions: 8415
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)