Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I24
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    29   1.2  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   1.2  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    28   1.6  
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb...    26   6.5  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   8.6  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    26   8.6  

>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/69 (24%), Positives = 38/69 (55%)
 Frame = +1

Query: 415 KAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNV 594
           K+++ LE S Q +E    E +   P+V++     +EK ++ V+   +E     +K+S N+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-----EKISRNL 185

Query: 595 QETNEKLAP 621
           + ++  ++P
Sbjct: 186 RSSSRSISP 194


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/65 (21%), Positives = 30/65 (46%)
 Frame = +1

Query: 415 KAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNV 594
           KA + LE+  ++ E + EE+   H    +  T  +   +   +  +QE  ++ K +    
Sbjct: 353 KACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEKIIQEKSRVDKMIDEYR 412

Query: 595 QETNE 609
           Q+ +E
Sbjct: 413 QKLSE 417


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 397 LGDANGKAKEALEQSRQNIERTXEELRKAHPD---VEKNATXLREKLQAXVQNTVQESQK 567
           + +A  KA+++LEQ+    +   E L K H +    E+     +EKL A ++   + S++
Sbjct: 52  INEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEE 111

Query: 568 L 570
           L
Sbjct: 112 L 112


>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 430 LEQSRQNIERTXEELRKAHPDVEK 501
           +EQ+R   E T E++++A P++EK
Sbjct: 126 IEQARPTEEITIEDMKQAVPEIEK 149


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +1

Query: 430 LEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNVQETNE 609
           ++   Q+IE T   L K   D+E++      +++   +  V + Q+  ++++  +Q+T E
Sbjct: 496 MKTQEQSIELT--RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKE 553

Query: 610 KLAPKIK 630
            L+   K
Sbjct: 554 VLSKSSK 560


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 409 NGKAKEALEQSRQNIERTXEELRKAHPDVEKN 504
           N K KE  E++     +  EELR+A PD E++
Sbjct: 22  NEKLKEDFEENVSIDVKIHEELRRALPDYEES 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,463
Number of Sequences: 5004
Number of extensions: 23638
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)