Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_I24
(924 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 35 0.071
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 35 0.071
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 35 0.071
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 35 0.071
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 35 0.071
AF024502-4|AAB70374.1| 675|Caenorhabditis elegans Hypothetical ... 32 0.50
AC024810-9|AAF60766.1| 547|Caenorhabditis elegans Hypothetical ... 32 0.67
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 31 1.2
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 31 1.2
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 30 2.0
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 30 2.7
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 30 2.7
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 29 3.6
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 29 3.6
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 29 3.6
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 29 3.6
AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical ... 29 3.6
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 29 3.6
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 29 3.6
AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical ... 29 3.6
AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical ... 29 3.6
AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical ... 29 3.6
AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical ... 29 3.6
AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical ... 29 3.6
AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical ... 29 3.6
U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate fi... 28 8.2
AF125962-2|AAY86293.1| 232|Caenorhabditis elegans Hypothetical ... 28 8.2
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 415 KAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNV 594
K E L++ + + E+LRK V+ + + VQE +KL ++ +N+
Sbjct: 2544 KETEKLKKQLEQLTELSEKLRKRKEAVKAGIPKYSKNTLDSIDEKVQEVEKLKAEIDANI 2603
Query: 595 QETNEKLA 618
+ET K++
Sbjct: 2604 EETRAKIS 2611
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 415 KAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNV 594
K E L++ + + E+LRK V+ + + VQE +KL ++ +N+
Sbjct: 2544 KETEKLKKQLEQLTELSEKLRKRKEAVKAGIPKYSKNTLDSIDEKVQEVEKLKAEIDANI 2603
Query: 595 QETNEKLA 618
+ET K++
Sbjct: 2604 EETRAKIS 2611
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 415 KAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNV 594
K E L++ + + E+LRK V+ + + VQE +KL ++ +N+
Sbjct: 358 KETEKLKKQLEQLTELSEKLRKRKEAVKAGIPKYSKNTLDSIDEKVQEVEKLKAEIDANI 417
Query: 595 QETNEKLA 618
+ET K++
Sbjct: 418 EETRAKIS 425
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 415 KAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNV 594
K E L++ + + E+LRK V+ + + VQE +KL ++ +N+
Sbjct: 2544 KETEKLKKQLEQLTELSEKLRKRKEAVKAGIPKYSKNTLDSIDEKVQEVEKLKAEIDANI 2603
Query: 595 QETNEKLA 618
+ET K++
Sbjct: 2604 EETRAKIS 2611
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 35.1 bits (77), Expect = 0.071
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 415 KAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNV 594
K E L++ + + E+LRK V+ + + VQE +KL ++ +N+
Sbjct: 2544 KETEKLKKQLEQLTELSEKLRKRKEAVKAGIPKYSKNTLDSIDEKVQEVEKLKAEIDANI 2603
Query: 595 QETNEKLA 618
+ET K++
Sbjct: 2604 EETRAKIS 2611
>AF024502-4|AAB70374.1| 675|Caenorhabditis elegans Hypothetical
protein M151.2 protein.
Length = 675
Score = 32.3 bits (70), Expect = 0.50
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Frame = +1
Query: 418 AKEALEQSRQNIERTXEELRKAHPDVEK-NATXLREKLQAXVQNT-----VQESQKLAKK 579
AKEAL +QN ER EL+K ++++ N K + +N+ VQE+Q L +K
Sbjct: 178 AKEALAAEKQNSEREKMELKKLTEELQRMNLENKELKNRVASENSRATGAVQEAQVLQEK 237
Query: 580 VSSNVQETNEK 612
+ ++ +EK
Sbjct: 238 LQQALKALDEK 248
>AC024810-9|AAF60766.1| 547|Caenorhabditis elegans Hypothetical
protein Y54E10A.12 protein.
Length = 547
Score = 31.9 bits (69), Expect = 0.67
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = +1
Query: 427 ALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQ------AXVQNTVQESQKLAKKVSS 588
+L++ + + E+T L K +EK+ LRE+ Q A VQ ESQ+ ++
Sbjct: 141 SLKEEKASFEKTQSALLKEKGKIEKDKLMLREEAQKQASMNAEVQKKELESQERLSVLNK 200
Query: 589 NVQETNEK 612
E NEK
Sbjct: 201 QFMEENEK 208
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 430 LEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNVQETNE 609
L+ + +E+ EEL+K+H + + L E+ Q +Q+ + K+ SSN+ N+
Sbjct: 728 LDNHNKELEKLREELKKSHTEHTSLESVLEEQQNELAQ--LQDQLREEKEQSSNLLVLNQ 785
Query: 610 KL 615
K+
Sbjct: 786 KI 787
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = +1
Query: 430 LEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNVQETNE 609
L+ + +E+ EEL+K+H + + L E+ Q +Q+ + K+ SSN+ N+
Sbjct: 728 LDNHNKELEKLREELKKSHTEHTSLESVLEEQQNELAQ--LQDQLREEKEQSSNLLVLNQ 785
Query: 610 KL 615
K+
Sbjct: 786 KI 787
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 499 KNATXLREKLQAXVQNTVQESQKLAKKVSSNVQETNEKLAPKIKXXYXXFXKNTQEVIKK 678
+N + +K VQ + QK+ KK + NVQ+ +K A K KN Q++ KK
Sbjct: 1265 ENVQKMCKKCAKNVQKCAKNVQKMCKKCAKNVQKMCKKCAKMCKKC----AKNVQKMCKK 1320
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +1
Query: 445 QNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNVQETNEK 612
+N+++ + ++K KN + +K + + QK+ KK + NVQ+ +K
Sbjct: 1276 KNVQKCAKNVQKMCKKCAKNVQKMCKKCAKMCKKCAKNVQKMCKKCAKNVQKMCKK 1331
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +1
Query: 403 DANGKAKEALEQSRQNIERTXEELRKAHPDVEKNATXL---REKLQAXVQNTVQESQKLA 573
D + EA E++R+N E ELR+ + D+ + + L R KL+ + E +++A
Sbjct: 1699 DELAQQAEAAERARRNAEAECIELREQNNDLNAHVSALTGQRRKLEGELLAAHAELEEIA 1758
Query: 574 KKVSSNVQE 600
++ + V++
Sbjct: 1759 NELKNAVEQ 1767
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +1
Query: 403 DANGKAKEALEQSRQNIERTXEELRKAHPDVEKNATXL---REKLQAXVQNTVQESQKLA 573
D + EA E++R+N E ELR+ + D+ + + L R KL+ + E +++A
Sbjct: 1699 DELAQQAEAAERARRNAEAECIELREQNNDLNAHVSALTGQRRKLEGELLAAHAELEEIA 1758
Query: 574 KKVSSNVQE 600
++ + V++
Sbjct: 1759 NELKNAVEQ 1767
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 403 DANGKAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKV 582
D A+E + Q + +ER EELR D +K T + L ++ + KL +K
Sbjct: 20 DRADAAEEKVRQITEKLERVEEELR----DTQKKMTQTGDDLDKAQEDLSAATSKLEEK- 74
Query: 583 SSNVQETNEKLA 618
VQE ++A
Sbjct: 75 EKTVQEAEAEVA 86
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 403 DANGKAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKV 582
D A+E + Q + +ER EELR D +K T + L ++ + KL +K
Sbjct: 20 DRADAAEEKVRQITEKLERVEEELR----DTQKKMTQTGDDLDKAQEDLSAATSKLEEK- 74
Query: 583 SSNVQETNEKLA 618
VQE ++A
Sbjct: 75 EKTVQEAEAEVA 86
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 403 DANGKAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKV 582
D A+E + Q + +ER EELR D +K T + L ++ + KL +K
Sbjct: 20 DRADAAEEKVRQITEKLERVEEELR----DTQKKMTQTGDDLDKAQEDLSAATSKLEEK- 74
Query: 583 SSNVQETNEKLA 618
VQE ++A
Sbjct: 75 EKTVQEAEAEVA 86
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 403 DANGKAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKV 582
D A+E + Q + +ER EELR D +K T + L ++ + KL +K
Sbjct: 20 DRADAAEEKVRQITEKLERVEEELR----DTQKKMTQTGDDLDKAQEDLSAATSKLEEK- 74
Query: 583 SSNVQETNEKLA 618
VQE ++A
Sbjct: 75 EKTVQEAEAEVA 86
>AL132877-6|CAE54913.1| 151|Caenorhabditis elegans Hypothetical
protein Y105E8B.1f protein.
Length = 151
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 403 DANGKAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKV 582
D A+E + Q + +ER EELR D +K T + L ++ + KL +K
Sbjct: 20 DRADAAEEKVRQITEKLERVEEELR----DTQKKMTQTGDDLDKAQEDLSAATSKLEEK- 74
Query: 583 SSNVQETNEKLA 618
VQE ++A
Sbjct: 75 EKTVQEAEAEVA 86
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 403 DANGKAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKV 582
D A+E + Q + +ER EELR D +K T + L ++ + KL +K
Sbjct: 20 DRADAAEEKVRQITEKLERVEEELR----DTQKKMTQTGDDLDKAQEDLSAATSKLEEK- 74
Query: 583 SSNVQETNEKLA 618
VQE ++A
Sbjct: 75 EKTVQEAEAEVA 86
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +1
Query: 403 DANGKAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKV 582
D A+E + Q + +ER EELR D +K T + L ++ + KL +K
Sbjct: 20 DRADAAEEKVRQITEKLERVEEELR----DTQKKMTQTGDDLDKAQEDLSAATSKLEEK- 74
Query: 583 SSNVQETNEKLA 618
VQE ++A
Sbjct: 75 EKTVQEAEAEVA 86
>AF038606-4|AAB92026.1| 331|Caenorhabditis elegans Hypothetical
protein C04C3.5a protein.
Length = 331
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 415 KAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNV 594
+A++ L+ + QNI + E+L +V + L EK++ + Q ++ AK S
Sbjct: 105 EAEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERKKREYEQLQKRFAKLQSFRP 164
Query: 595 Q--ETNEKLAPKIKXXYXXFXKN 657
Q + E+ ++K Y + N
Sbjct: 165 QYMDEYERFEERLKKLYEVYVLN 187
>AF038606-3|AAX55701.1| 393|Caenorhabditis elegans Hypothetical
protein C04C3.5c protein.
Length = 393
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 415 KAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNV 594
+A++ L+ + QNI + E+L +V + L EK++ + Q ++ AK S
Sbjct: 167 EAEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERKKREYEQLQKRFAKLQSFRP 226
Query: 595 Q--ETNEKLAPKIKXXYXXFXKN 657
Q + E+ ++K Y + N
Sbjct: 227 QYMDEYERFEERLKKLYEVYVLN 249
>AF038606-2|AAX55700.1| 404|Caenorhabditis elegans Hypothetical
protein C04C3.5b protein.
Length = 404
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 415 KAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNV 594
+A++ L+ + QNI + E+L +V + L EK++ + Q ++ AK S
Sbjct: 178 EAEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERKKREYEQLQKRFAKLQSFRP 237
Query: 595 Q--ETNEKLAPKIKXXYXXFXKN 657
Q + E+ ++K Y + N
Sbjct: 238 QYMDEYERFEERLKKLYEVYVLN 260
>AB182367-3|BAD23998.1| 331|Caenorhabditis elegans hypothetical
protein protein.
Length = 331
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 415 KAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNV 594
+A++ L+ + QNI + E+L +V + L EK++ + Q ++ AK S
Sbjct: 105 EAEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERKKREYEQLQKRFAKLQSFRP 164
Query: 595 Q--ETNEKLAPKIKXXYXXFXKN 657
Q + E+ ++K Y + N
Sbjct: 165 QYMDEYERFEERLKKLYEVYVLN 187
>AB182367-2|BAD23997.1| 393|Caenorhabditis elegans hypothetical
protein protein.
Length = 393
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 415 KAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNV 594
+A++ L+ + QNI + E+L +V + L EK++ + Q ++ AK S
Sbjct: 167 EAEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERKKREYEQLQKRFAKLQSFRP 226
Query: 595 Q--ETNEKLAPKIKXXYXXFXKN 657
Q + E+ ++K Y + N
Sbjct: 227 QYMDEYERFEERLKKLYEVYVLN 249
>AB182367-1|BAD23996.1| 404|Caenorhabditis elegans hypothetical
protein protein.
Length = 404
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 415 KAKEALEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNV 594
+A++ L+ + QNI + E+L +V + L EK++ + Q ++ AK S
Sbjct: 178 EAEKVLQATVQNIAQETEQLSNKLNNVASDEAELDEKIERKKREYEQLQKRFAKLQSFRP 237
Query: 595 Q--ETNEKLAPKIKXXYXXFXKN 657
Q + E+ ++K Y + N
Sbjct: 238 QYMDEYERFEERLKKLYEVYVLN 260
>U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate
filament, d protein 2 protein.
Length = 443
Score = 28.3 bits (60), Expect = 8.2
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = +1
Query: 430 LEQSRQNIERTXEELRKAHPDVEKNATXLREKLQAXVQNTVQESQKLAKKVSSNVQETN 606
+ +++ I + +RK PDV L Q VQ +E ++ K+ SN++ N
Sbjct: 116 VRENKAKISTAEQNIRKLEPDVISAKKNLESSFQLRVQ--TREDKRSQMKILSNLEAEN 172
>AF125962-2|AAY86293.1| 232|Caenorhabditis elegans Hypothetical
protein Y39H10B.2 protein.
Length = 232
Score = 28.3 bits (60), Expect = 8.2
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Frame = +1
Query: 430 LEQSRQNIERTX-------EELRKAHPDVEKNATXLREKLQAXVQNT-----VQESQKLA 573
+EQSRQ E EE ++ +++ +A R + Q + N+ VQ+ QKL
Sbjct: 72 MEQSRQQSEAMISQMKTQTEEFQRIVQELKDDADERRNRAQTSLDNSEYETLVQQRQKLI 131
Query: 574 KKVSSNVQETNEKL 615
+ + QET E+L
Sbjct: 132 ENSEKSQQETKEQL 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,307,483
Number of Sequences: 27780
Number of extensions: 148065
Number of successful extensions: 714
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -