Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I23
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    94   2e-20
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.0  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    26   7.9  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 94.3 bits (224), Expect = 2e-20
 Identities = 47/88 (53%), Positives = 59/88 (67%)
 Frame = +3

Query: 117 LQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 296
           +   F+QAAA+VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWE 59

Query: 297 KLAGTSKDDAQKAYIEIVEGLIASIGLK 380
           +L G SK+DA   YI  V+ L    G+K
Sbjct: 60  ELKGKSKEDAASEYISFVDELKTKYGMK 87


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
 Frame = +3

Query: 129  FDQAAANVKNLKALPTDAQLLNLYAHFKQ--ATVGDADPANRPGLLD-LKGKAKFDAWHK 299
            F Q AA+++    +  DA LLN+Y +F+Q  + V +A    +  L + +K +    +W  
Sbjct: 3302 FSQHAASLRICHGI--DAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKD 3359

Query: 300  L-AGTSKDDAQKAYIEIVEGL 359
                  K+ A+K++ E+ + L
Sbjct: 3360 TNVYALKESAKKSHAELFKVL 3380


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 57  CSFGTGVSSFNKLPHLINMSLQEKFDQ 137
           C    G +SFNK P  I   + +KF Q
Sbjct: 47  CGLTRGFASFNKPPQTITEKIVQKFAQ 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,480
Number of Sequences: 5004
Number of extensions: 50958
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)