Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I23
         (865 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               57   2e-08
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    30   2.8  
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)                   29   3.7  
SB_8483| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  

>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 57.2 bits (132), Expect = 2e-08
 Identities = 31/76 (40%), Positives = 45/76 (59%)
 Frame = +3

Query: 117 LQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 296
           +Q+ F QA   V++LK L  D Q L  Y  FKQAT G     +RPG  D+ GKAK+++WH
Sbjct: 13  VQDLFAQATDYVRSLKNL-RDEQKLLFYGLFKQATEGPCK-TSRPGFWDIVGKAKWESWH 70

Query: 297 KLAGTSKDDAQKAYIE 344
           +     ++ A K Y++
Sbjct: 71  QHGKMPQEKAMKIYVQ 86


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 66   GTGVSSFNKLPHLINMSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFK-QATVGDAD 236
            GTG+  F        + L +  D+   +  NL    TDA   NLY+  K + TVGD++
Sbjct: 1091 GTGMDKFFINSSTGELHLSKTLDRETTSSYNLVVKATDASNANLYSTAKIEITVGDSN 1148


>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
          Length = 382

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 429 YRVYYINTRAFSHHQRTSDFFDAIFI 506
           Y V Y NTRAF  H+R  DF   +F+
Sbjct: 43  YFVAYHNTRAFLRHKREHDFEFQVFV 68


>SB_8483| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 429 YRVYYINTRAFSHHQRTSDFFDAIFI 506
           Y V Y NTRAF  H+R  DF   +F+
Sbjct: 43  YFVAYHNTRAFLRHKREHDFEFQVFV 68


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,137,847
Number of Sequences: 59808
Number of extensions: 368252
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)