Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I21
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0667 + 4878784-4878900,4879016-4879118,4879256-4879341,487...    31   1.6  
03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   6.4  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   8.5  
08_02_0411 + 16855255-16855644                                         28   8.5  

>06_01_0667 +
           4878784-4878900,4879016-4879118,4879256-4879341,
           4879434-4879496,4879589-4879831,4880639-4880728,
           4881403-4881600
          Length = 299

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 29/88 (32%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
 Frame = -2

Query: 720 PRFXKGRKAGQVSGKRQGRNRRAXEGSXPGGKRLVSL*SXSGFATSD--LSVDFCDARQG 547
           P     R     +  R+G N+R    +      L SL   SGF       S D   A  G
Sbjct: 159 PAAANARSPAAAATSRKGVNKRCSPAAMDMDSGLSSLLGISGFCFEAPWTSQDASTAAGG 218

Query: 546 GGAYGKTPATRPFYGSWPFAGLLLTCSF 463
           GG  GK    RP   S   AGL L  SF
Sbjct: 219 GG--GKRRKQRPPPASHNVAGLNLAASF 244


>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 352 PLPRSLTRCARSF--GCGERYQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 507
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 301 NESAN---ARGEAVCVLGALPLPRSLTRCAR 384
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


>08_02_0411 + 16855255-16855644
          Length = 129

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = -3

Query: 701 ERRDRYPVSGRVGTGERXRGAXQGGNAWYLYSPXRV 594
           ERR R    G      R RG  +GG  W    P  V
Sbjct: 70  ERRRRQGRGGEEAAAARARGIWEGGGGWIFQQPGSV 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,498,007
Number of Sequences: 37544
Number of extensions: 424078
Number of successful extensions: 1085
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)