Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I20
         (929 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)             168   5e-42
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                36   0.062

>SB_13168| Best HMM Match : Ribosomal_S26e (HMM E-Value=0)
          Length = 289

 Score =  168 bits (409), Expect = 5e-42
 Identities = 76/88 (86%), Positives = 82/88 (93%)
 Frame = +3

Query: 129 AKHGRGHVKAVXCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAK 308
           +KHGRGHVK V CTNCARCVPKDK+IKKFVIRNIVEAAAVRDI DASVY ++ LPKLY K
Sbjct: 11  SKHGRGHVKFVRCTNCARCVPKDKSIKKFVIRNIVEAAAVRDIADASVYEVYALPKLYVK 70

Query: 309 LHYCVSCAIHSKVVRNRSKKDRRIRTPP 392
           LHYCVSCAIHSKVVRNRSK+DR+IRTPP
Sbjct: 71  LHYCVSCAIHSKVVRNRSKEDRKIRTPP 98


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 35.5 bits (78), Expect = 0.062
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +3

Query: 174 CAR-CVPKDKAIKKFVIRNIVEAAAVRD--INDASVYPMFQLPKLYAKLHYC--VS--CA 332
           C R C+ +D+ I  FVI     AAAVRD  + D ++Y      +       C  VS  C 
Sbjct: 664 CERDCIMRDRTICDFVICG--RAAAVRDCIMRDRAIYNCVMSDRFIRDCVMCDRVSRDCL 721

Query: 333 IHSKVVRNRSKKDRRIR 383
           IH +VVR+   +DR IR
Sbjct: 722 IHDRVVRDCVMRDRVIR 738


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,696,496
Number of Sequences: 59808
Number of extensions: 246478
Number of successful extensions: 453
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2705204627
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)