Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_I19
         (1022 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)                      31   2.0  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         28   2.3  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   2.9  
SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)                   25   6.4  

>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
          Length = 330

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = -1

Query: 539 PPPPPXQXXXXXXFFFXXXXFFFFPPPPXKXXFFLXPPPXXP 414
           PPPPP         F       F PPPP    F   PPP  P
Sbjct: 280 PPPPPPPPSNTPGMFASSG---FQPPPPPPTDFAPPPPPPEP 318


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 27.9 bits (59), Expect(2) = 2.3
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -2

Query: 586 PPXPFFXXXXXXXXXPPPPPPP 521
           PP P           PPPPPPP
Sbjct: 681 PPLPVIEGSSLSVPPPPPPPPP 702



 Score = 21.0 bits (42), Expect(2) = 2.3
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 541 PPPPPPPK 518
           PPPPP P+
Sbjct: 726 PPPPPSPQ 733


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 24.2 bits (50), Expect(2) = 2.9
 Identities = 9/21 (42%), Positives = 9/21 (42%)
 Frame = -2

Query: 583 PXPFFXXXXXXXXXPPPPPPP 521
           P P           PPPPPPP
Sbjct: 675 PIPIQTMVPPPPPPPPPPPPP 695



 Score = 24.2 bits (50), Expect(2) = 2.9
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 541 PPPPPPPK 518
           PPPPPPP+
Sbjct: 695 PPPPPPPQ 702


>SB_25368| Best HMM Match : PID (HMM E-Value=2.7e-22)
          Length = 1197

 Score = 24.6 bits (51), Expect(2) = 6.4
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 541 PPPPPPPK 518
           PPPPPPP+
Sbjct: 912 PPPPPPPR 919



 Score = 22.6 bits (46), Expect(2) = 6.4
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -2

Query: 586 PPXPFFXXXXXXXXXPPPPPPP 521
           PP P           PPPPP P
Sbjct: 871 PPRPRTRPLPPKSDTPPPPPRP 892


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,834,271
Number of Sequences: 59808
Number of extensions: 174215
Number of successful extensions: 2016
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 16,821,457
effective HSP length: 83
effective length of database: 11,857,393
effective search space used: 3047350001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)